PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00618g00629.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

MYB_related

Protein Properties

Length: 297aa MW: 32438.1 Da PI: 10.2321

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00618g00629.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	38.7	2.3e-12	50	94	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+ E++++++a +++ + Wk+I + +g +t q++s+ qky Peaxi162Scf00618g00629.1 50 RESWTEPEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 94 789***************77.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.84E-16	44	100	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.18	45	99	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.9E-6	48	100	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-18	48	97	IPR006447	Myb domain, plants
SMART	SM00717	6.5E-10	49	97	IPR001005	SANT/Myb domain
Pfam	PF00249	4.2E-10	50	94	IPR001005	SANT/Myb domain
CDD	cd00167	1.05E-7	52	95	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009651	Biological Process	response to salt stress
GO:0009723	Biological Process	response to ethylene
GO:0009737	Biological Process	response to abscisic acid
GO:0009739	Biological Process	response to gibberellin
GO:0009751	Biological Process	response to salicylic acid
GO:0009753	Biological Process	response to jasmonic acid
GO:0046686	Biological Process	response to cadmium ion
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MVMALPNLGS FSNPTVAVAA AATGSNSNPL SPSDDPSKKI RKPYTITKSR ESWTEPEHDK 60 FLEALQLFDR DWKKIEAFVG SKTVIQIRSH AQKYFLKVQK SGTNEHLPPP RPKRKAAHPY 120 PQKASKSAPA VSAVPAPFQA SLPLPDPGFV KRPDSSLLAS NPITAVSVPS WTDNAVPPVS 180 LSQVKKDNAR ETAQPLANNQ CCSSNESTPR SKATGEVMER IQVPSMRVLP DFAQVYNFIG 240 SVFDPAVTGH LQKLKKMDRI DVETVLLLMR NLSINLTSPD FEHHSSASAI LAILRGN

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00625	PBM	Transfer from PK02532.1	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC254360	1e-54	AC254360.3 Solanum lycopersicum strain Heinz 1706 chromosome 6 clone slm-20n17 map 6, complete sequence.
GenBank	AC254409	1e-54	AC254409.2 Solanum lycopersicum strain Heinz 1706 chromosome 6 clone slm-45k12 map 6, complete sequence.
GenBank	AC254421	1e-54	AC254421.3 Solanum lycopersicum strain Heinz 1706 chromosome 6 clone hba-44l22 map 6, complete sequence.
GenBank	AC254464	1e-54	AC254464.2 Solanum lycopersicum strain Heinz 1706 chromosome 6 clone slm-62j20 map 6, complete sequence.
GenBank	AC254493	1e-54	AC254493.3 Solanum lycopersicum strain Heinz 1706 chromosome 6 clone hba-15i11 map 6, complete sequence.
GenBank	AC254498	1e-54	AC254498.2 Solanum lycopersicum strain Heinz 1706 chromosome 6 clone sle-6i6 map 6, complete sequence.
GenBank	HG975518	1e-54	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016575738.1	0.0	PREDICTED: protein REVEILLE 6 isoform X2
Swissprot	Q8H0W3	1e-104	RVE6_ARATH; Protein REVEILLE 6
TrEMBL	A0A2G3C655	0.0	A0A2G3C655_CAPCH; Protein REVEILLE 3
STRING	XP_009630509.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA998	24	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52660.2	5e-84	MYB_related family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761]