PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00589g00322.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family NAC
Protein Properties Length: 488aa    MW: 54490.7 Da    PI: 4.4365
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00589g00322.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.52.8e-4941311128
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                               lppGfrFhPtd elv++yLk+k+ gkkl++ ++i+e++iyk+ Pw+Lp k ++k+++ ewyfF++r++kya+g r nrat++gyW
  Peaxi162Scf00589g00322.1   4 LPPGFRFHPTDVELVMYYLKRKIMGKKLHF-DAITELNIYKFSPWELPdKcCYKSKDLEWYFFCPRERKYASGARMNRATETGYW 87 
                               79**************************99.99***************6545666777*************************** PP

                       NAM  84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                               k+tgkd++v+  ++++vg  ktL+f++g+ pkg++tdWv+heyr+
  Peaxi162Scf00589g00322.1  88 KTTGKDRSVIY-DEKVVGSVKTLIFHRGHPPKGQRTDWVIHEYRF 131
                               ***********.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.76E-592154IPR003441NAC domain
PROSITE profilePS5100555.0484154IPR003441NAC domain
PfamPF023651.9E-245130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MARLPPGFRF HPTDVELVMY YLKRKIMGKK LHFDAITELN IYKFSPWELP DKCCYKSKDL  60
EWYFFCPRER KYASGARMNR ATETGYWKTT GKDRSVIYDE KVVGSVKTLI FHRGHPPKGQ  120
RTDWVIHEYR FEDKRLADAG FVQDAYVLCR VFQKNGLGPQ NGAQYGAPFK EDDWEDDEVP  180
AAEPFTSDVF SAPPALPENQ SYSIVTSLVD LGSTSGWPSG EPSQPSIQRI PSDERDPGEL  240
PAEPNPSNVS SMNWMPSDKL DDEEVLGESN PSNILSALHV LPDKQSYSIG SSMINPGPGP  300
SNALLCTNEM HLGEQDDEII SLLAHFTDDP SLISAGYENN QNMENFNQDL NVPTPFTGGN  360
DIFDSLKDID NWAGLGQLRS NLSAGWGANY SLNHMIVPDD VAFMELNDLE TPLYHSAEII  420
ETGQFGLGNF YAPYNSNVDM QQLSFGSNHV LENQLPMLIE SYTQQVNHSG MVRPCTSLQV  480
GGGSSLGQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-43415517166NO APICAL MERISTEM PROTEIN
1ut4_B3e-43415517166NO APICAL MERISTEM PROTEIN
1ut7_A3e-43415517166NO APICAL MERISTEM PROTEIN
1ut7_B3e-43415517166NO APICAL MERISTEM PROTEIN
4dul_A3e-43415517166NAC domain-containing protein 19
4dul_B3e-43415517166NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00583DAPTransfer from AT5G64060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF5098650.0AF509865.1 Petunia x hybrida nam-like protein 2 (NH2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019259094.10.0PREDICTED: NAC domain-containing protein 78-like isoform X2
TrEMBLQ8LRM30.0Q8LRM3_PETHY; Nam-like protein 2
STRINGXP_009762029.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA60502334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.11e-86NAC domain containing protein 103