PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00588g00811.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | B3 | ||||||||
Protein Properties | Length: 901aa MW: 98135.9 Da PI: 6.9328 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 59.2 | 7e-19 | 333 | 432 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvv 81 f+kvl+ sd+++ grlvlpk++ae++ ++++ + l+++d++g +W++++++ +++s++yvl+ G ++ +L++gD+v+ Peaxi162Scf00588g00811.1 333 FEKVLSASDAGRIGRLVLPKRCAEAYfpPISNPDGLPLKVQDLKGTEWNFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDIVT 416 99**************************444456667***************9989999999***9.****************** PP EEE-SSSEE..EEEEE- CS B3 82 Fkldgrsefelvvkvfr 98 F++++ +++lv++ ++ Peaxi162Scf00588g00811.1 417 FSRIE-PDGKLVMGCRK 432 **987.77767776665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.0E-31 | 329 | 441 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.15E-20 | 330 | 429 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.09E-24 | 331 | 432 | No hit | No description |
Pfam | PF02362 | 2.4E-16 | 333 | 432 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.884 | 333 | 434 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.8E-23 | 333 | 433 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 12.888 | 579 | 635 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 1.5E-10 | 591 | 632 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 901 aa Download sequence Send to blast |
MSSSSAKACC FNANCKELVQ VPKKGWRRRT GEFADLCDRC ASAYDDGKFC ETFHLNSSGW 60 RSCESCGKQI HCGCIVSFHT FVLLDAGGIE CLSCARKSFI LTPNPAWPPP SLFLPLQPER 120 FKDVNNWNPI AGSGPVPWHQ APSLFNGSTI QNEMQPRTPF IDATGSIDRL CLSERLSASS 180 SDNNRKDPCE KLMNGKLKIG VPGILENGYA GLSCEEPTKS CLNAPRQLSF VKNDLSTPGF 240 SLTIGSSCKN EPTDHNNVSA SLPQQATVLT PQGKQPSGHA TVDSPGETQV RNSKSRGDGR 300 GKHHLLPRYW PRITDRELQQ ISGDSNSVIT PLFEKVLSAS DAGRIGRLVL PKRCAEAYFP 360 PISNPDGLPL KVQDLKGTEW NFQFRFWPNN NSRMYVLEGV TPCIQSMQLQ AGDIVTFSRI 420 EPDGKLVMGC RKASTAEQGS EACSNSNGVV TNGNVNTKIN KLSEEVLANS TKKGSSLIPH 480 VAMADSTSAR VEIKISDDMV KESLGNNFSV PCKRKSSTLG SKSKRMRIEN EALLELKVTV 540 VQAQELMRPP SSDAPTVIVV EGCEFEEYED APIIGRPTIP SMDYLGEKIQ LVQCEDCFKW 600 RKVPDSALLP SRWTCSENSW DPERSVCSAV QELTADHLRD LLPHINKAAK KMKASKQETD 660 LVEALDGLDA LANLAILEEG SLPASSQATT KHPRHRPGCT CIVCIQPPSG GPKHKQSCDC 720 IVCKSVKRRF KTLMLKREQK LSEKEAEAAC QKLQPQLAGQ LLDADDIQES MDEAGHFSPQ 780 HGELNNEGYV EDPNSLNEKK SSASPLKGEI DLNAKPERDD ELSPGSDSGS MMRILQDAAE 840 QYVRHCGNGN LAGTKKKGNG AGETNPSNCI IVGGSQTDVG HNRPFSIGTA ASLAPNDPLD 900 T |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 5e-64 | 311 | 436 | 2 | 127 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016514250.1 | 0.0 | PREDICTED: B3 domain-containing protein Os07g0563300-like isoform X2 | ||||
TrEMBL | A0A1S4DLG5 | 0.0 | A0A1S4DLG5_TOBAC; B3 domain-containing protein Os07g0563300-like isoform X2 | ||||
STRING | XP_009794882.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7128 | 21 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 1e-163 | HSI2-like 1 |