PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00588g00811.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

Protein Properties

Length: 901aa MW: 98135.9 Da PI: 6.9328

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00588g00811.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	59.2	7e-19	333	432	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvv 81 f+kvl+ sd+++ grlvlpk++ae++ ++++ + l+++d++g +W++++++ +++s++yvl+ G ++ +L++gD+v+ Peaxi162Scf00588g00811.1 333 FEKVLSASDAGRIGRLVLPKRCAEAYfpPISNPDGLPLKVQDLKGTEWNFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDIVT 416 99************************444456667***********99899999999.*************** PP EEE-SSSEE..EEEEE- CS B3 82 Fkldgrsefelvvkvfr 98 F++++ +++lv++ ++ Peaxi162Scf00588g00811.1 417 FSRIE-PDGKLVMGCRK 432 987.77767776665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.0E-31	329	441	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	6.15E-20	330	429	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	7.09E-24	331	432	No hit	No description
Pfam	PF02362	2.4E-16	333	432	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.884	333	434	IPR003340	B3 DNA binding domain
SMART	SM01019	8.8E-23	333	433	IPR003340	B3 DNA binding domain
PROSITE profile	PS51050	12.888	579	635	IPR011124	Zinc finger, CW-type
Pfam	PF07496	1.5E-10	591	632	IPR011124	Zinc finger, CW-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 901 aa Download sequence Send to blast
MSSSSAKACC FNANCKELVQ VPKKGWRRRT GEFADLCDRC ASAYDDGKFC ETFHLNSSGW 60 RSCESCGKQI HCGCIVSFHT FVLLDAGGIE CLSCARKSFI LTPNPAWPPP SLFLPLQPER 120 FKDVNNWNPI AGSGPVPWHQ APSLFNGSTI QNEMQPRTPF IDATGSIDRL CLSERLSASS 180 SDNNRKDPCE KLMNGKLKIG VPGILENGYA GLSCEEPTKS CLNAPRQLSF VKNDLSTPGF 240 SLTIGSSCKN EPTDHNNVSA SLPQQATVLT PQGKQPSGHA TVDSPGETQV RNSKSRGDGR 300 GKHHLLPRYW PRITDRELQQ ISGDSNSVIT PLFEKVLSAS DAGRIGRLVL PKRCAEAYFP 360 PISNPDGLPL KVQDLKGTEW NFQFRFWPNN NSRMYVLEGV TPCIQSMQLQ AGDIVTFSRI 420 EPDGKLVMGC RKASTAEQGS EACSNSNGVV TNGNVNTKIN KLSEEVLANS TKKGSSLIPH 480 VAMADSTSAR VEIKISDDMV KESLGNNFSV PCKRKSSTLG SKSKRMRIEN EALLELKVTV 540 VQAQELMRPP SSDAPTVIVV EGCEFEEYED APIIGRPTIP SMDYLGEKIQ LVQCEDCFKW 600 RKVPDSALLP SRWTCSENSW DPERSVCSAV QELTADHLRD LLPHINKAAK KMKASKQETD 660 LVEALDGLDA LANLAILEEG SLPASSQATT KHPRHRPGCT CIVCIQPPSG GPKHKQSCDC 720 IVCKSVKRRF KTLMLKREQK LSEKEAEAAC QKLQPQLAGQ LLDADDIQES MDEAGHFSPQ 780 HGELNNEGYV EDPNSLNEKK SSASPLKGEI DLNAKPERDD ELSPGSDSGS MMRILQDAAE 840 QYVRHCGNGN LAGTKKKGNG AGETNPSNCI IVGGSQTDVG HNRPFSIGTA ASLAPNDPLD 900 T

Sequence ? help Back to Top

Protein Sequence Length: 901 aa Download sequence Send to blast

MSSSSAKACC FNANCKELVQ VPKKGWRRRT GEFADLCDRC ASAYDDGKFC ETFHLNSSGW  60
RSCESCGKQI HCGCIVSFHT FVLLDAGGIE CLSCARKSFI LTPNPAWPPP SLFLPLQPER  120
FKDVNNWNPI AGSGPVPWHQ APSLFNGSTI QNEMQPRTPF IDATGSIDRL CLSERLSASS  180
SDNNRKDPCE KLMNGKLKIG VPGILENGYA GLSCEEPTKS CLNAPRQLSF VKNDLSTPGF  240
SLTIGSSCKN EPTDHNNVSA SLPQQATVLT PQGKQPSGHA TVDSPGETQV RNSKSRGDGR  300
GKHHLLPRYW PRITDRELQQ ISGDSNSVIT PLFEKVLSAS DAGRIGRLVL PKRCAEAYFP  360
PISNPDGLPL KVQDLKGTEW NFQFRFWPNN NSRMYVLEGV TPCIQSMQLQ AGDIVTFSRI  420
EPDGKLVMGC RKASTAEQGS EACSNSNGVV TNGNVNTKIN KLSEEVLANS TKKGSSLIPH  480
VAMADSTSAR VEIKISDDMV KESLGNNFSV PCKRKSSTLG SKSKRMRIEN EALLELKVTV  540
VQAQELMRPP SSDAPTVIVV EGCEFEEYED APIIGRPTIP SMDYLGEKIQ LVQCEDCFKW  600
RKVPDSALLP SRWTCSENSW DPERSVCSAV QELTADHLRD LLPHINKAAK KMKASKQETD  660
LVEALDGLDA LANLAILEEG SLPASSQATT KHPRHRPGCT CIVCIQPPSG GPKHKQSCDC  720
IVCKSVKRRF KTLMLKREQK LSEKEAEAAC QKLQPQLAGQ LLDADDIQES MDEAGHFSPQ  780
HGELNNEGYV EDPNSLNEKK SSASPLKGEI DLNAKPERDD ELSPGSDSGS MMRILQDAAE  840
QYVRHCGNGN LAGTKKKGNG AGETNPSNCI IVGGSQTDVG HNRPFSIGTA ASLAPNDPLD  900
T

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9a_A	5e-64	311	436	2	127	B3 domain-containing transcription repressor VAL1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016514250.1	0.0	PREDICTED: B3 domain-containing protein Os07g0563300-like isoform X2
TrEMBL	A0A1S4DLG5	0.0	A0A1S4DLG5_TOBAC; B3 domain-containing protein Os07g0563300-like isoform X2
STRING	XP_009794882.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7128	21	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	1e-163	HSI2-like 1