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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00577g00036.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | ZF-HD | ||||||||
Protein Properties | Length: 247aa MW: 27534.9 Da PI: 8.4586 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 50.4 | 5.2e-16 | 89 | 120 | 3 | 35 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee 35 +v+Y eClkNhAa++Gg+a DGC+Efmps gee Peaxi162Scf00577g00036.1 89 GVKYMECLKNHAAAIGGNARDGCCEFMPS-GEE 120 689*************************9.555 PP | |||||||
2 | Homeobox | 19 | 2.4e-06 | 181 | 236 | 1 | 52 |
TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrR 52 +r Rt+ft+eq e L ++ e k ++++ + + + ++lg++ r+ kvW +N + Peaxi162Scf00577g00036.1 181 KRFRTKFTPEQKEKLFNFAEkagwKIQKLDDSVIHQFCQELGIKRRVLKVWMHNNK 236 789**********9987666777779****************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.9E-13 | 90 | 121 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 3.0E-9 | 91 | 121 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 16.699 | 92 | 149 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-28 | 176 | 242 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.85E-20 | 176 | 241 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 3.1E-26 | 180 | 236 | IPR006455 | Homeodomain, ZF-HD class |
CDD | cd00086 | 3.50E-4 | 181 | 234 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MSNISTQVVA LNNNNNNNNN KSSNVEDGYY PNENGSQAME VHDQERVIHE EPLSEGNSKK 60 YMVIVRNSST PFGYNKAGGN NDNIIDEGGV KYMECLKNHA AAIGGNARDG CCEFMPSGEE 120 GPEVIGYPTG TLIITPKAAL EQRKISYKNG IITSPTSDSD DEKEGAGFMA LKRPCQQAMK 180 KRFRTKFTPE QKEKLFNFAE KAGWKIQKLD DSVIHQFCQE LGIKRRVLKV WMHNNKHNSA 240 KKSSPTT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 3e-22 | 179 | 238 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020230704.1 | 7e-56 | zinc-finger homeodomain protein 4 | ||||
Swissprot | O64722 | 4e-43 | ZHD3_ARATH; Zinc-finger homeodomain protein 3 | ||||
TrEMBL | A0A151SB96 | 2e-54 | A0A151SB96_CAJCA; ZF-HD homeobox protein At4g24660 family | ||||
TrEMBL | A0A438JA84 | 4e-54 | A0A438JA84_VITVI; Zinc-finger homeodomain protein 3 | ||||
STRING | XP_007154109.1 | 3e-53 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA18379 | 2 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02540.1 | 5e-45 | homeobox protein 21 |
Publications ? help Back to Top | |||
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