PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00566g00051.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | MYB | ||||||||
Protein Properties | Length: 252aa MW: 27845.8 Da PI: 8.9404 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.8 | 6e-19 | 31 | 76 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd++l ++v+++G ++W++I++++ gR++k+c++rw + Peaxi162Scf00566g00051.1 31 KGPWSAEEDKILTKLVERYGARNWSLISKYIK-GRSGKSCRLRWCNQ 76 79*****************************9.***********985 PP | |||||||
2 | Myb_DNA-binding | 53.9 | 4.1e-17 | 85 | 127 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +++ Ede ++ a++++G++ W+tIar ++ gRt++ +k++w++ Peaxi162Scf00566g00051.1 85 PFSHAEDETILAAHAKYGNR-WATIARLLP-GRTDNAVKNHWNST 127 7999****************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.612 | 26 | 81 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.56E-31 | 29 | 124 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-16 | 30 | 79 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-18 | 31 | 76 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.5E-25 | 32 | 84 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.94E-15 | 33 | 75 | No hit | No description |
PROSITE profile | PS51294 | 21.024 | 82 | 132 | IPR017930 | Myb domain |
SMART | SM00717 | 7.2E-15 | 82 | 130 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.6E-14 | 85 | 127 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.82E-11 | 85 | 128 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.9E-23 | 85 | 131 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MENFNRCSTS TSSSSESSSS ESSLNKAERI KGPWSAEEDK ILTKLVERYG ARNWSLISKY 60 IKGRSGKSCR LRWCNQLSPN VQHRPFSHAE DETILAAHAK YGNRWATIAR LLPGRTDNAV 120 KNHWNSTLKR RYQQQKNHNT VIFPDMKNGS GSGSGSGSGS RSGSGSCMDY LNVDESPRGT 180 NVKVVVNNCN SEYDDPMTEL SLAPPGMGGD ELPERKTESF SAGFWDVMRD VIAKEVREYV 240 ASSFNGASTG FP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 9e-41 | 28 | 131 | 1 | 104 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019237788.1 | 1e-128 | PREDICTED: transcription factor MYB44-like | ||||
TrEMBL | A0A1J6KH95 | 1e-126 | A0A1J6KH95_NICAT; Transcription factor myb44 | ||||
STRING | XP_009620130.1 | 1e-127 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7950 | 21 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50060.1 | 3e-56 | myb domain protein 77 |