PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00553g00033.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 156aa MW: 18005.4 Da PI: 8.7003 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 60.6 | 1.9e-19 | 18 | 59 | 1 | 42 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 k+i+n+ r+vtfskRr g++KKA+EL++L +ae+a+ii s Peaxi162Scf00553g00033.1 18 KPINNQASRHVTFSKRRLGLFKKASELCILSGAEIAIIIPSL 59 68************************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.9E-22 | 10 | 70 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 20.142 | 10 | 58 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.96E-23 | 11 | 101 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.2E-11 | 12 | 32 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.9E-18 | 20 | 67 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.2E-11 | 32 | 47 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MNGNTKKKTQ GRRRIAIKPI NNQASRHVTF SKRRLGLFKK ASELCILSGA EIAIIIPSLK 60 RHRLFAFGHP SVDAVIDRYV NGKSSSTTAD QLNNMQRNNQ YYSDICRELE EEKKKKKEMI 120 DERKIVNDDN DGGFWWDEPT DDFGIDELEE FLTALE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC240204 | 8e-33 | AC240204.1 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-33m2 map 1, complete sequence. | |||
GenBank | HG975513 | 8e-33 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009602824.1 | 9e-73 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A3Q7ERW3 | 4e-70 | A0A3Q7ERW3_SOLLC; Uncharacterized protein | ||||
STRING | XP_009602824.1 | 3e-72 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2134 | 22 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 3e-31 | AGAMOUS-like 62 |