PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00538g00233.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

C2H2

Protein Properties

Length: 568aa MW: 63324 Da PI: 8.4534

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00538g00233.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.5	2.7e-06	400	424	2	23
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC+ dC +Fs++snL++Hi+ H Peaxi162Scf00538g00233.1 400 KCEfkDCQHTFSTRSNLVQHIKAvH 424 69999****************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00274	2.1E-9	52	132	IPR000741	Fructose-bisphosphate aldolase, class-I
SuperFamily	SSF51569	1.67E-79	52	335	No hit	No description
Gene3D	G3DSA:3.20.20.70	1.6E-84	52	332	IPR013785	Aldolase-type TIM barrel
Pfam	PF00274	2.1E-72	145	336	IPR000741	Fructose-bisphosphate aldolase, class-I
PROSITE pattern	PS00158	0	217	227	IPR029768	Fructose-bisphosphate aldolase class-I active site
SMART	SM00355	9.3	341	366	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	343	366	IPR007087	Zinc finger, C2H2
SMART	SM00355	13	369	390	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	1.04E-9	381	437	No hit	No description
SMART	SM00355	0.0011	399	424	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	13.547	399	429	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	6.7E-6	400	426	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	401	424	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.4E-5	427	452	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	11	430	456	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	432	456	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006096	Biological Process	glycolytic process
GO:0003676	Molecular Function	nucleic acid binding
GO:0004332	Molecular Function	fructose-bisphosphate aldolase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 568 aa Download sequence Send to blast
MASASLLKSS PVLDKSEFVK GQTLRQPSVS VIHCHLLQPH VSLCITRAWN IGMDESNATS 60 GKRLASIGLE NTEANAKLIE LCFSRSWTVH LWCHSFRGEQ STVEGRKMVD VLVEQNIVQG 120 IKVDKVLMAL HLALLLTNNR ELDLRTVASI PNGPSALGVK EAAWVLARYA AISHDNGLVP 180 IVEPEILLDG EHGIDRTSEV SQKVWAEVLF YLAENNVMFE GILLKPSMVT PGAECKDRAI 240 PEQVADYTLK LLRRRIPPAV PGIMAKVEAT FNLNAMNQAP NPWHVSFSYA RALQNTCLKT 300 WGGLPENVKA AQDALLTRAK ANSLAQLGKY TGQVKLETVE ALCLEPGCMK HFTNEKCLKE 360 HINTCHQHIV CEICGTKQLK KNIKRHLRTH EEGPTSERVK CEFKDCQHTF STRSNLVQHI 420 KAVHLGDKPF SCGIPGCGMK FAFKHVRDRH EKSGCHVYTP GDFVETDEQF RSRPRGGRKR 480 KLPVFEDIMR KRITPPSGTD RVFNQGSEYL SWLLSVESDD ELISLLKSSP VLDKSEFVKG 540 QTLRQPSVSV IHCHLLQPHV SLSALPSD

Sequence ? help Back to Top

Protein Sequence Length: 568 aa Download sequence Send to blast

MASASLLKSS PVLDKSEFVK GQTLRQPSVS VIHCHLLQPH VSLCITRAWN IGMDESNATS  60
GKRLASIGLE NTEANAKLIE LCFSRSWTVH LWCHSFRGEQ STVEGRKMVD VLVEQNIVQG  120
IKVDKVLMAL HLALLLTNNR ELDLRTVASI PNGPSALGVK EAAWVLARYA AISHDNGLVP  180
IVEPEILLDG EHGIDRTSEV SQKVWAEVLF YLAENNVMFE GILLKPSMVT PGAECKDRAI  240
PEQVADYTLK LLRRRIPPAV PGIMAKVEAT FNLNAMNQAP NPWHVSFSYA RALQNTCLKT  300
WGGLPENVKA AQDALLTRAK ANSLAQLGKY TGQVKLETVE ALCLEPGCMK HFTNEKCLKE  360
HINTCHQHIV CEICGTKQLK KNIKRHLRTH EEGPTSERVK CEFKDCQHTF STRSNLVQHI  420
KAVHLGDKPF SCGIPGCGMK FAFKHVRDRH EKSGCHVYTP GDFVETDEQF RSRPRGGRKR  480
KLPVFEDIMR KRITPPSGTD RVFNQGSEYL SWLLSVESDD ELISLLKSSP VLDKSEFVKG  540
QTLRQPSVSV IHCHLLQPHV SLSALPSD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4d2j_A	3e-63	51	330	32	344	FRUCTOSE-BISPHOSPHATE ALDOLASE
5tjs_A	3e-63	51	330	31	343	Fructose-bisphosphate aldolase
5tk3_A	3e-63	51	330	31	343	Fructose-bisphosphate aldolase
5tkc_A	3e-63	51	330	31	343	Fructose-bisphosphate aldolase
5tkl_A	3e-63	51	330	31	343	Fructose-bisphosphate aldolase
5tkn_A	3e-63	51	330	31	343	Fructose-bisphosphate aldolase
5tkp_A	3e-63	51	330	31	343	Fructose-bisphosphate aldolase
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	472	480	RPRGGRKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a key role in glycolysis and gluconeogenesis. {ECO:0000250\|UniProtKB:Q9SJQ9}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By glucose and sucrose (PubMed:22561114). Induced by drought stress (PubMed:22561114). {ECO:0000269\|PubMed:22561114}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019254826.1	1e-163	PREDICTED: fructose-bisphosphate aldolase 1, chloroplastic-like
Swissprot	Q944G9	1e-145	ALFP2_ARATH; Fructose-bisphosphate aldolase 2, chloroplastic
TrEMBL	A0A1J6IGW4	1e-162	A0A1J6IGW4_NICAT; Fructose-bisphosphate aldolase
STRING	XP_009779127.1	1e-162	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3644	24	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.1	1e-73	transcription factor IIIA

Publications ? help Back to Top
Horvath DP,Schaffer R,West M,Wisman E Arabidopsis microarrays identify conserved and differentially expressed genes involved in shoot growth and development from distantly related plant species. Plant J., 2003. 34(1): p. 125-34 [PMID:12662315] Ferro M, et al. Proteomics of the chloroplast envelope membranes from Arabidopsis thaliana. Mol. Cell Proteomics, 2003. 2(5): p. 325-45 [PMID:12766230] Pan D, et al. PathMAPA: a tool for displaying gene expression and performing statistical tests on metabolic pathways at multiple levels for Arabidopsis. BMC Bioinformatics, 2003. 4: p. 56 [PMID:14604444] Suh MC, et al. Comparative analysis of expressed sequence tags from Sesamum indicum and Arabidopsis thaliana developing seeds. Plant Mol. Biol., 2003. 52(6): p. 1107-23 [PMID:14682612] Wienkoop S, et al. Linking protein fractionation with multidimensional monolithic reversed-phase peptide chromatography/mass spectrometry enhances protein identification from complex mixtures even in the presence of abundant proteins. Rapid Commun. Mass Spectrom., 2004. 18(6): p. 643-50 [PMID:15052571] Kubis S, et al. Functional specialization amongst the Arabidopsis Toc159 family of chloroplast protein import receptors. Plant Cell, 2004. 16(8): p. 2059-77 [PMID:15273297] Rouhier N, et al. Identification of plant glutaredoxin targets. Antioxid. Redox Signal., 2005 Jul-Aug. 7(7-8): p. 919-29 [PMID:15998247] Peltier JB, et al. The oligomeric stromal proteome of Arabidopsis thaliana chloroplasts. Mol. Cell Proteomics, 2006. 5(1): p. 114-33 [PMID:16207701] Sorin C, et al. Proteomic analysis of different mutant genotypes of Arabidopsis led to the identification of 11 proteins correlating with adventitious root development. Plant Physiol., 2006. 140(1): p. 349-64 [PMID:16377752] Vidi PA, et al. Tocopherol cyclase (VTE1) localization and vitamin E accumulation in chloroplast plastoglobule lipoprotein particles. J. Biol. Chem., 2006. 281(16): p. 11225-34 [PMID:16414959] Ghassemian M, et al. Integrative analysis of transcript and metabolite profiling data sets to evaluate the regulation of biochemical pathways during photomorphogenesis. Arch. Biochem. Biophys., 2006. 448(1-2): p. 45-59 [PMID:16460663] Ytterberg AJ,Peltier JB,van Wijk KJ Protein profiling of plastoglobules in chloroplasts and chromoplasts. A surprising site for differential accumulation of metabolic enzymes. Plant Physiol., 2006. 140(3): p. 984-97 [PMID:16461379] Gómez LD,Baud S,Gilday A,Li Y,Graham IA Delayed embryo development in the ARABIDOPSIS TREHALOSE-6-PHOSPHATE SYNTHASE 1 mutant is associated with altered cell wall structure, decreased cell division and starch accumulation. Plant J., 2006. 46(1): p. 69-84 [PMID:16553896] Giacomelli L,Rudella A,van Wijk KJ High light response of the thylakoid proteome in arabidopsis wild type and the ascorbate-deficient mutant vtc2-2. A comparative proteomics study. Plant Physiol., 2006. 141(2): p. 685-701 [PMID:16648217] Rius SP,Casati P,Iglesias AA,Gomez-Casati DF Characterization of an Arabidopsis thaliana mutant lacking a cytosolic non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase. Plant Mol. Biol., 2006. 61(6): p. 945-57 [PMID:16927206] Sjögren LL,Stanne TM,Zheng B,Sutinen S,Clarke AK Structural and functional insights into the chloroplast ATP-dependent Clp protease in Arabidopsis. Plant Cell, 2006. 18(10): p. 2635-49 [PMID:16980539] Chibani K, et al. Proteomic analysis of seed dormancy in Arabidopsis. Plant Physiol., 2006. 142(4): p. 1493-510 [PMID:17028149] Marchand C,Le Maréchal P,Meyer Y,Decottignies P Comparative proteomic approaches for the isolation of proteins interacting with thioredoxin. Proteomics, 2006. 6(24): p. 6528-37 [PMID:17163439] Espagne C,Martinez A,Valot B,Meinnel T,Giglione C Alternative and effective proteomic analysis in Arabidopsis. Proteomics, 2007. 7(20): p. 3788-99 [PMID:17828791] Ehlting J, et al. An extensive (co-)expression analysis tool for the cytochrome P450 superfamily in Arabidopsis thaliana. BMC Plant Biol., 2008. 8: p. 47 [PMID:18433503] Bindschedler LV,Palmblad M,Cramer R Hydroponic isotope labelling of entire plants (HILEP) for quantitative plant proteomics; an oxidative stress case study. Phytochemistry, 2008. 69(10): p. 1962-72 [PMID:18538804] Rutschow H,Ytterberg AJ,Friso G,Nilsson R,van Wijk KJ Quantitative proteomics of a chloroplast SRP54 sorting mutant and its genetic interactions with CLPC1 in Arabidopsis. Plant Physiol., 2008. 148(1): p. 156-75 [PMID:18633119] Ghelis T, et al. Protein tyrosine kinases and protein tyrosine phosphatases are involved in abscisic acid-dependent processes in Arabidopsis seeds and suspension cells. Plant Physiol., 2008. 148(3): p. 1668-80 [PMID:18768909] Robinson SJ,Parkin IA Differential SAGE analysis in Arabidopsis uncovers increased transcriptome complexity in response to low temperature. BMC Genomics, 2008. 9: p. 434 [PMID:18808718] Aryal UK,Krochko JE,Ross AR Identification of phosphoproteins in Arabidopsis thaliana leaves using polyethylene glycol fractionation, immobilized metal-ion affinity chromatography, two-dimensional gel electrophoresis and mass spectrometry. J. Proteome Res., 2012. 11(1): p. 425-37 [PMID:22092075] Mininno M, et al. Characterization of chloroplastic fructose 1,6-bisphosphate aldolases as lysine-methylated proteins in plants. J. Biol. Chem., 2012. 287(25): p. 21034-44 [PMID:22547063] Lu W, et al. Identification and characterization of fructose 1,6-bisphosphate aldolase genes in Arabidopsis reveal a gene family with diverse responses to abiotic stresses. Gene, 2012. 503(1): p. 65-74 [PMID:22561114] Tsutsumi K, et al. Structural analysis of the chloroplastic and cytoplasmic aldolase-encoding genes implicated the occurrence of multiple loci in rice. Gene, 1994. 141(2): p. 215-20 [PMID:8163192]