PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00536g00312.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family Trihelix
Protein Properties Length: 849aa    MW: 93848.1 Da    PI: 9.392
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00536g00312.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.13.1e-15789849161
                  trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkry 61 
                               rW+ +ev++Li++r e+++r++  + + +lWee+s+++ ++g+ r+p qCk+ w +  k+y
  Peaxi162Scf00536g00312.1 789 RWKPEEVKKLIKIRGELHRRFQVLRGRTALWEEISSRLLSGGIDRTPSQCKSQWASQVKKY 849
                               8*****************************************************9999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.60.15.101.5E-6675325IPR001279Metallo-beta-lactamase
SuperFamilySSF562813.19E-7076490IPR001279Metallo-beta-lactamase
SMARTSM008496.8E-2588285IPR001279Metallo-beta-lactamase
PfamPF127066.0E-10100235IPR001279Metallo-beta-lactamase
PfamPF075214.7E-7433462IPR011108Zn-dependent metallo-hydrolase, RNA specificity domain
PROSITE profilePS500908.606782846IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.609.5E-7784848IPR009057Homeodomain-like
SMARTSM007170.0021786848IPR001005SANT/Myb domain
PfamPF138371.6E-10787849No hitNo description
CDDcd122032.70E-19788849No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 849 aa     Download sequence    Send to blast
MASFSAVSVC SYNLCNPTKP KPFISCSIPS PSYIGIRGTK GPHKRLAKTE GAGRSIDDSV  60
QRRMEQFYQG SDGPPLRVLP IGGLGEIGMN CMLVGNYDRY ILIDAGVMFP GYDELGVQKI  120
IPDTTFIKKW SHKIEAVVIT HGHEDHIGAL PWVIPALDSH TPIFASSFTM KLIKKRLKEF  180
GIFVPSRLKE FKIRRKFSAG PFEVESIRVT HSIPDCSGLV LRCANGTILH TGDWKIDESP  240
LDGKVFDREA LEELSKEGVT LMMSDSTNVL SPGRTLSETV VADSLLRHIS AAKGRVITTQ  300
FASNIHRLGS VKAAADLTGR KLVFVGMSLR TYLEAAWKDG NAPIDPSTLV KVEDIDAYAP  360
KDLLIVTTGS QAETRAALNL ASYGSSHLLK LNKEDIILYS AKVIPGNDSR VMKMLNRISD  420
IGSTIVMGKN ELLHTSGHAH REELEEVLRI VKPQHFLPIH GELLFLKEHE LLGRSTGIHH  480
TAVIKNGEML GISHLRNRKV LSNGFISLGK ENFQLMYSDG DKAFGTSAEL CVDERLRIAS  540
DGLIVVSMEI LRPQFSEGIA EKTLKGKIRI TTRCLWLDKG KLLDALHKAA HAALSSCPVN  600
CPLSHMERTV SDVLRKMVMK YSSKKPEVIA VALENPPGVL ADEIKGKLSR KSGVGFGISA  660
LRKVLDVDQR KRQPSATHAE ECHAHANPIN DAEQQIKGDD RIDVERFMHK EAITSSSSSQ  720
DKFSSSEGLS DNFCKSDITS IPVDQLSEGS FDNLSQAGSE EMFRKVSVGL DSNLLESKLK  780
SSNPLKRNRW KPEEVKKLIK IRGELHRRFQ VLRGRTALWE EISSRLLSGG IDRTPSQCKS  840
QWASQVKKY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3bk1_A2e-826963510562Metal dependent hydrolase
3bk2_A2e-826963510562Metal dependent hydrolase
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). {ECO:0000250|UniProtKB:Q72JJ7, ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:22033332, ECO:0000269|PubMed:25871650}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:25871650}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754423e-79HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019227038.10.0PREDICTED: uncharacterized protein LOC109208380
SwissprotQ84W560.0RNJ_ARATH; Ribonuclease J
TrEMBLA0A314KRF70.0A0A314KRF7_NICAT; Uncharacterized protein (Fragment)
STRINGXP_009774848.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58742331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63420.10.0Trihelix family protein
Publications ? help Back to Top
  1. Bryant N,Lloyd J,Sweeney C,Myouga F,Meinke D
    Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis.
    Plant Physiol., 2011. 155(4): p. 1678-89
    [PMID:21139083]
  2. Halpert M,Liveanu V,Glaser F,Schuster G
    The Arabidopsis chloroplast RNase J displays both exo- and robust endonucleolytic activities.
    Plant Mol. Biol., 2019. 99(1-2): p. 17-29
    [PMID:30511330]