PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00535g00715.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family B3
Protein Properties Length: 407aa    MW: 47551.6 Da    PI: 10.0909
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00535g00715.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.42e-16811601698
                               EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                        B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                                ++p kf+++ + +++   + +l+ +sg+sW+v++  r  ++ yv+ +GW+ Fvk+++L++ D +vF++dg s+f  +v++f+
  Peaxi162Scf00535g00715.1  81 KRIPHKFVTNLKDSHKLLGQKILKGPSGNSWKVEV-KRTEDDDYVFCNGWELFVKDHNLEAEDLLVFRMDGFSSF--NVMIFD 160
                               589*****877555566667788************.3555555*************************9887999..898887 PP
2B371.31.2e-22293373487
                               E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                        B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                               v++++ +  +g+l lpk fae++ ++  +s t+ l++ +sgr+Wev +  r+++++ v+++GW++Fv +n+L+e D++vF+l + 
  Peaxi162Scf00535g00715.1 293 VTMQPTHVDRGQLKLPKGFAEKYTKN--QSETINLTTpSSGRTWEVSI--RRRQEGLVMQTGWEDFVMDNNLEEYDICVFELAQG 373
                               445666677788***********866..7889*****7788*******..*******************************8853 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010198.9E-875162IPR003340B3 DNA binding domain
CDDcd100172.92E-1578160No hitNo description
SuperFamilySSF1019362.16E-1878167IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.4E-1878164IPR015300DNA-binding pseudobarrel domain
PfamPF023624.3E-1480160IPR003340B3 DNA binding domain
PROSITE profilePS5086312.61983162IPR003340B3 DNA binding domain
SuperFamilySSF1019361.96E-22288389IPR015300DNA-binding pseudobarrel domain
CDDcd100171.38E-17289389No hitNo description
Gene3DG3DSA:2.40.330.106.3E-25289390IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.79290391IPR003340B3 DNA binding domain
SMARTSM010192.0E-20291391IPR003340B3 DNA binding domain
PfamPF023629.4E-20293374IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MAIRGVTVYT KMTSVGSTAS ERKTIFLRTK RRLPVNEQSH FILQNRLVTL AKWEMATICE  60
RCKGLEKKKY WEKFNQQQFF KRIPHKFVTN LKDSHKLLGQ KILKGPSGNS WKVEVKRTED  120
DDYVFCNGWE LFVKDHNLEA EDLLVFRMDG FSSFNVMIFD LSACEKEDTF FVKKQRNPCK  180
HQAEVMYDGT SEQESSENDE HSNDSKEQQS YGKHYSFHLP EPRKGKKLKK ILIAKQEKRK  240
RKCTPLSSSC KKKMKSEEKR HMFSNRRLVT QKERIKVLQM ASKHISFVPS FLVTMQPTHV  300
DRGQLKLPKG FAEKYTKNQS ETINLTTPSS GRTWEVSIRR RQEGLVMQTG WEDFVMDNNL  360
EEYDICVFEL AQGGKHNSKP VVLDVYIFRA VDEIMRQSSS NSTSIIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006338757.11e-161PREDICTED: B3 domain-containing protein REM16-like
TrEMBLA0A0V0I0F91e-160A0A0V0I0F9_SOLCH; Putative B3 domain-containing protein REM16-like
STRINGXP_009631052.11e-157(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA136031216
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.17e-19B3 family protein