PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00535g00042.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | TALE | ||||||||
Protein Properties | Length: 752aa MW: 82454.1 Da PI: 6.9699 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.5 | 2.6e-09 | 532 | 569 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + Peaxi162Scf00535g00042.1 532 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 569 664459******************************88 PP | |||||||
2 | BELL | 94.2 | 1.2e-30 | 410 | 464 | 18 | 72 |
BELL 18 eVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +Vd+rY++y+eq+q+v++sF+ v+g g+a pYt+lA+ka+SrhFrcLkdaia q+ Peaxi162Scf00535g00042.1 410 KVDRRYNHYCEQMQMVVNSFDLVMGFGAAVPYTALAQKAMSRHFRCLKDAIAAQL 464 7***************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 6.8E-68 | 332 | 462 | IPR006563 | POX domain |
Pfam | PF07526 | 1.3E-42 | 337 | 461 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.568 | 510 | 573 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.23E-12 | 513 | 574 | No hit | No description |
SMART | SM00389 | 1.2E-9 | 513 | 577 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.51E-17 | 515 | 580 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.0E-29 | 516 | 579 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 3.8E-18 | 530 | 569 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 752 aa Download sequence Send to blast |
MGIASTPPRP YVTSHNSKGD NPIIHQVIEK ANSMSQDYHH QSLFNFSNGF ERSQAEQQQQ 60 QQQQHHMAQQ IRRDKLRVQG FDPPPFEEEE ASGLPVYHET AGMLSEMFNF PPGTVTTATT 120 ELLESQFNQN FRHPNQNPRS QPTATGMGGE WFGSRQGMIV GAASHQQVPL GYGKNHNNQI 180 SSAISVADSA AAMQLFLMNP PQPRSPSSPS PSSHHHHNNP PSTLHMLLPN PSSTSTLQGF 240 PNPAEGSFGQ FTTHLTTPNE IGGINVVESQ GLSLSLSSSL QHLDATKESE MLFFNQGGSN 300 SGQFRYKNLS IGGGGVTQNN LQQVHVGYGS SLGVVNVLRN SKYAKAAQEL LEEFCSVGRG 360 KFKKSNNKAA TNPNTNNPSG GGGNNNTSSS SSKDVPPLSA ADRIEHQRRK VDRRYNHYCE 420 QMQMVVNSFD LVMGFGAAVP YTALAQKAMS RHFRCLKDAI AAQLKHSCEL LGEKDAGTSG 480 ITKGETPRLK MLEQSLRQQR AFHQMGMMEQ EAWRPQRGLP ERSVNILRAW LFEHFLHPYP 540 SDADKHLLAR QTGLSRNQVS NWFINARVRL WKPMVEEMYQ QEAKEEDDEE DEKSQSPNSG 600 HGINSTNAQT PTPNSSSTNI MTTTTTAAAT ETVTAATVIT TTTTTASTIV NKRSEINALH 660 ENDPSLIAIN SHISTTFSEN QASSNFPTII HDPSDCRRGN FPGEDYAADD VGSTMIRFGT 720 STTTAGDVSL TLGLRHAGNL PENNNSNTHF FG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 2e-16 | 519 | 577 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 2e-16 | 519 | 577 | 5 | 63 | Homeobox protein Meis2 |
4xrm_A | 2e-16 | 519 | 577 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 2e-16 | 519 | 577 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF406699 | 0.0 | AF406699.1 Solanum tuberosum BEL1-related homeotic protein 13 (Bel13) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009776283.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 2 | ||||
Swissprot | Q9SW80 | 1e-165 | BLH2_ARATH; BEL1-like homeodomain protein 2 | ||||
TrEMBL | A0A1U7WCA3 | 0.0 | A0A1U7WCA3_NICSY; BEL1-like homeodomain protein 2 | ||||
STRING | XP_009776283.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3341 | 21 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36870.2 | 1e-143 | BEL1-like homeodomain 2 |
Publications ? help Back to Top | |||
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