PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Peaxi162Scf00533g00037.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 176aa MW: 19892.7 Da PI: 10.4692 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 74.5 | 2.2e-23 | 33 | 119 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +fY Y ++ GF+vr+ + +ks+++++++++ fvCskeg+ ++ k ++r++ tr gCk + v+k+++g w + +l + H Peaxi162Scf00533g00037.1 33 NFYLGYTHRNGFNVRRGRVTKSRKDQSVISQAFVCSKEGFFPKKYFK---NNRPQDLTREGCKVLIYVSKKEEGAWAIRRLISGH 114 6***************************************9998776...899******************************** PP FAR1 86 nHela 90 nHela Peaxi162Scf00533g00037.1 115 NHELA 119 ***97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.8E-20 | 33 | 119 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 176 aa Download sequence Send to blast |
MDETTQAVPN LGVENRREPY IDMKFSSLDD TFNFYLGYTH RNGFNVRRGR VTKSRKDQSV 60 ISQAFVCSKE GFFPKKYFKN NRPQDLTREG CKVLIYVSKK EEGAWAIRRL ISGHNHELAT 120 PSSQKFLQSK RKKSKAQKDL IDLLDDSGVR PGASVAFSSA GKFSTTLALP LAFSMA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015167012.1 | 1e-66 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | D5MNY6 | 3e-61 | D5MNY6_SOLLC; Transposon-like element Lyt2-2 DNA |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA645 | 8 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38180.1 | 6e-21 | FAR1-related sequence 5 |