PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00503g00427.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family HD-ZIP
Protein Properties Length: 334aa    MW: 38125.8 Da    PI: 6.6754
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00503g00427.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.78.2e-18122175356
                               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                               k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rq+ +WFqNrRa++k
  Peaxi162Scf00503g00427.1 122 KKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 175
                               456899***********************************************9 PP
2HD-ZIP_I/II131.72.8e-42121213193
               HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 
                               ekkrrl+ eqvk+LE++Fe  +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy++Lkr++da+k+en++L+++++
  Peaxi162Scf00503g00427.1 121 EKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKRQFDAIKAENDALQAQNQ 205
                               69*********************************************************************************** PP

               HD-ZIP_I/II  86 eLreelke 93 
                               +L++e+++
  Peaxi162Scf00503g00427.1 206 KLHAEIMA 213
                               ***99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.75E-19108179IPR009057Homeodomain-like
PROSITE profilePS5007117.329117177IPR001356Homeobox domain
SMARTSM003891.8E-17120181IPR001356Homeobox domain
PfamPF000463.6E-15122175IPR001356Homeobox domain
CDDcd000861.95E-15122178No hitNo description
Gene3DG3DSA:1.10.10.604.9E-19124184IPR009057Homeodomain-like
PRINTSPR000311.4E-5148157IPR000047Helix-turn-helix motif
PROSITE patternPS000270152175IPR017970Homeobox, conserved site
PRINTSPR000311.4E-5157173IPR000047Helix-turn-helix motif
PfamPF021835.4E-17177219IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0048826Biological Processcotyledon morphogenesis
GO:0080022Biological Processprimary root development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MHTYNKPKLH KLGKASLEAD KHESQSYIFG PVAKAFKVMT CTNEMAFFPT NFMLQTTHED  60
DQHQPSTSLT PILPSCSPQD FHGIASFLGK RSMSFSGMEA NNCEENHGED DLSDDGSQAG  120
EKKRRLNMEQ VKTLEKNFEL GNKLEPERKM QLARALGLQP RQIAIWFQNR RARWKTKQLE  180
KDYDVLKRQF DAIKAENDAL QAQNQKLHAE IMALKNMEQP TESINLNKET EGSCSNRSEN  240
SSEIKLDISR TPAIDSPLSN HPITSRPFFP PSMRPITNGV AQLFHNSNTS SRPDLQQCLK  300
NMDQSVKEES LSNMFCGIDD QTAFWPWLEQ QQFN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169177RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00225DAPTransfer from AT1G69780Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1425051e-151AC142505.1 Solanum demissum chromosome 5 clone PGEC287I17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016548012.10.0PREDICTED: homeobox-leucine zipper protein ATHB-13
SwissprotQ8LC031e-125ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBLA0A2G2VLY10.0A0A2G2VLY1_CAPBA; Homeobox-leucine zipper protein HOX21
STRINGXP_009593379.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8482498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.11e-128HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  3. Wang X, et al.
    Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
    Sci China Life Sci, 2018. 61(1): p. 79-87
    [PMID:28887625]
  4. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]