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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00495g00016.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | GRAS | ||||||||
Protein Properties | Length: 467aa MW: 53508.3 Da PI: 6.353 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 283.1 | 7.8e-87 | 82 | 463 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 l++lLl A+a+++++ a + L +l ++ s gd++qR+aayf+ +L arl+ s y+ + +t+ +ee+ a++ f+ Peaxi162Scf00495g00016.1 82 LIHLLLISATAIDENSIDSAVENLHELYQNISLVGDSVQRVAAYFADGLIARLLTRKSPFYDMIMKPPTQ----EEEFLAFTEFY 162 689****************************************************999999988766665....68889999*** PP GRAS 86 evsPilkfshltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetge 163 +vsP+++f+h+taNqaIle +e+e +H+iDfdis+G+QWp+L+q+L++ + ++ sl+iTg g+ +el+et+ Peaxi162Scf00495g00016.1 163 KVSPFYQFAHFTANQAILETFEREeqhnnGFLHVIDFDISYGFQWPSLIQSLSENAttSNRISLKITGYGK----TMDELHETET 243 **********************9976666778*********************988656677*********....9********* PP GRAS 164 rLakfAeel.gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqead 247 rL +fA+ + +++fef+ + l +l +L +++E++aVnl+++l +l s s+++e+Lk+v + P +v++veqe Peaxi162Scf00495g00016.1 244 RLVSFAKGFrNLSFEFQGF----LIGSKLTNLTKRKNETVAVNLIFHLNSLS--SY---SKISETLKAVHDFCPSIVTMVEQEGG 319 *******9758*******8....5566789999999**********999997..33...33568*******************55 PP GRAS 248 h..nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae....rrerhetlekWrerleeaGFkp 326 + + ++Fl rf+e+l+y++a+fdsl+ l +s er +E+ lg+ei+nv+ + r ++ +e+W+ r+e+ GF Peaxi162Scf00495g00016.1 320 CrrSPQNFLPRFMESLHYFAAMFDSLDDCLRIDSIERLIIEKNHLGKEIKNVLNYDPKVergnTRSYEQMAETWKGRMESHGFLG 404 543888***********************************************87654311103344556789************ PP GRAS 327 vplsekaakqaklllrkvk.sdgyrve..........eesgslv.lgWkdrpLvsvSaW 373 +pls+k+ +qaklll+ ++ s +++ e+ ++ l W+dr+++++SaW Peaxi162Scf00495g00016.1 405 LPLSSKNIMQAKLLLKITShSSPIQLDggiggfrvfeTEDPIAIsLAWQDRSIITASAW 463 ***************988744433333333333333334555557************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 46.382 | 56 | 432 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.7E-84 | 82 | 463 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 467 aa Download sequence Send to blast |
MGDIVDHEEE LLCLRLSILT DSCCERNKKM KKRKRELAFI KTWDLNESCE GKIFRLLELR 60 EAMLKIDPKK KDVVEDGKGL HLIHLLLISA TAIDENSIDS AVENLHELYQ NISLVGDSVQ 120 RVAAYFADGL IARLLTRKSP FYDMIMKPPT QEEEFLAFTE FYKVSPFYQF AHFTANQAIL 180 ETFEREEQHN NGFLHVIDFD ISYGFQWPSL IQSLSENATT SNRISLKITG YGKTMDELHE 240 TETRLVSFAK GFRNLSFEFQ GFLIGSKLTN LTKRKNETVA VNLIFHLNSL SSYSKISETL 300 KAVHDFCPSI VTMVEQEGGC RRSPQNFLPR FMESLHYFAA MFDSLDDCLR IDSIERLIIE 360 KNHLGKEIKN VLNYDPKVER GNTRSYEQMA ETWKGRMESH GFLGLPLSSK NIMQAKLLLK 420 ITSHSSPIQL DGGIGGFRVF ETEDPIAISL AWQDRSIITA SAWHCVF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-54 | 68 | 463 | 2 | 378 | Protein SCARECROW |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009620664.1 | 0.0 | PREDICTED: scarecrow-like protein 21 | ||||
Refseq | XP_016487626.1 | 0.0 | PREDICTED: scarecrow-like protein 21 | ||||
TrEMBL | A0A1S4BFL8 | 0.0 | A0A1S4BFL8_TOBAC; scarecrow-like protein 21 | ||||
STRING | XP_009620664.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12354 | 18 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54220.1 | 1e-53 | GRAS family protein |