PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00495g00016.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family GRAS
Protein Properties Length: 467aa    MW: 53508.3 Da    PI: 6.353
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00495g00016.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS283.17.8e-87824631373
                      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                               l++lLl  A+a+++++   a + L +l ++ s  gd++qR+aayf+ +L arl+   s  y+ +   +t+    +ee+ a++ f+
  Peaxi162Scf00495g00016.1  82 LIHLLLISATAIDENSIDSAVENLHELYQNISLVGDSVQRVAAYFADGLIARLLTRKSPFYDMIMKPPTQ----EEEFLAFTEFY 162
                               689****************************************************999999988766665....68889999*** PP

                      GRAS  86 evsPilkfshltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetge 163
                               +vsP+++f+h+taNqaIle +e+e       +H+iDfdis+G+QWp+L+q+L++ +  ++  sl+iTg g+      +el+et+ 
  Peaxi162Scf00495g00016.1 163 KVSPFYQFAHFTANQAILETFEREeqhnnGFLHVIDFDISYGFQWPSLIQSLSENAttSNRISLKITGYGK----TMDELHETET 243
                               **********************9976666778*********************988656677*********....9********* PP

                      GRAS 164 rLakfAeel.gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqead 247
                               rL +fA+ + +++fef+ +    l   +l +L  +++E++aVnl+++l +l   s    s+++e+Lk+v +  P +v++veqe  
  Peaxi162Scf00495g00016.1 244 RLVSFAKGFrNLSFEFQGF----LIGSKLTNLTKRKNETVAVNLIFHLNSLS--SY---SKISETLKAVHDFCPSIVTMVEQEGG 319
                               *******9758*******8....5566789999999**********999997..33...33568*******************55 PP

                      GRAS 248 h..nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae....rrerhetlekWrerleeaGFkp 326
                               +  + ++Fl rf+e+l+y++a+fdsl+  l  +s er  +E+  lg+ei+nv+    +      r  ++ +e+W+ r+e+ GF  
  Peaxi162Scf00495g00016.1 320 CrrSPQNFLPRFMESLHYFAAMFDSLDDCLRIDSIERLIIEKNHLGKEIKNVLNYDPKVergnTRSYEQMAETWKGRMESHGFLG 404
                               543888***********************************************87654311103344556789************ PP

                      GRAS 327 vplsekaakqaklllrkvk.sdgyrve..........eesgslv.lgWkdrpLvsvSaW 373
                               +pls+k+ +qaklll+ ++ s   +++           e+  ++ l W+dr+++++SaW
  Peaxi162Scf00495g00016.1 405 LPLSSKNIMQAKLLLKITShSSPIQLDggiggfrvfeTEDPIAIsLAWQDRSIITASAW 463
                               ***************988744433333333333333334555557************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.38256432IPR005202Transcription factor GRAS
PfamPF035142.7E-8482463IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MGDIVDHEEE LLCLRLSILT DSCCERNKKM KKRKRELAFI KTWDLNESCE GKIFRLLELR  60
EAMLKIDPKK KDVVEDGKGL HLIHLLLISA TAIDENSIDS AVENLHELYQ NISLVGDSVQ  120
RVAAYFADGL IARLLTRKSP FYDMIMKPPT QEEEFLAFTE FYKVSPFYQF AHFTANQAIL  180
ETFEREEQHN NGFLHVIDFD ISYGFQWPSL IQSLSENATT SNRISLKITG YGKTMDELHE  240
TETRLVSFAK GFRNLSFEFQ GFLIGSKLTN LTKRKNETVA VNLIFHLNSL SSYSKISETL  300
KAVHDFCPSI VTMVEQEGGC RRSPQNFLPR FMESLHYFAA MFDSLDDCLR IDSIERLIIE  360
KNHLGKEIKN VLNYDPKVER GNTRSYEQMA ETWKGRMESH GFLGLPLSSK NIMQAKLLLK  420
ITSHSSPIQL DGGIGGFRVF ETEDPIAISL AWQDRSIITA SAWHCVF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-54684632378Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009620664.10.0PREDICTED: scarecrow-like protein 21
RefseqXP_016487626.10.0PREDICTED: scarecrow-like protein 21
TrEMBLA0A1S4BFL80.0A0A1S4BFL8_TOBAC; scarecrow-like protein 21
STRINGXP_009620664.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA123541823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-53GRAS family protein