PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00490g00310.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family NAC
Protein Properties Length: 338aa    MW: 38941.9 Da    PI: 9.4964
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00490g00310.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM108.95.9e-341002401128
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrk 74 
                               lp+G++F+P+d+e++ e+L++kv +++      +   + +i+++d    i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk
  Peaxi162Scf00490g00310.1 100 LPAGVKFDPSDQEIL-EHLNAKVLSDThrlhplI---DkFIPTIDgengICYTHPEKLP-GVSKDGQVRHFFHRPSKAYTTGNRK 179
                               799***********9.99****999995664332...233444444445**********.566677888**************** PP

                       NAM  75 nratk......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                               +r+++      + +W++tgk+++v+  +g+l+g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  Peaxi162Scf00490g00310.1 180 RRKVHtdtdggETRWHKTGKTRPVFI-SGNLKGYKKILVLYtnYGRQRKPEKTNWVMHQYHL 240
                               **743345555677************.999***********66589**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-3895259IPR003441NAC domain
PROSITE profilePS5100533.856100259IPR003441NAC domain
PfamPF023651.2E-14101240IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MFYSPSWVFF FFFQLKERKK RKLEKKVDHI WDGHKTNTRE MKWCNESNDQ AALQIIQASR  60
EENSVITSKV NHEVRKITCP SCGHSIELQD QRGIHDLPGL PAGVKFDPSD QEILEHLNAK  120
VLSDTHRLHP LIDKFIPTID GENGICYTHP EKLPGVSKDG QVRHFFHRPS KAYTTGNRKR  180
RKVHTDTDGG ETRWHKTGKT RPVFISGNLK GYKKILVLYT NYGRQRKPEK TNWVMHQYHL  240
GDNEEEKDGE LVVSKVFYQT QPRQCSIKEP FNKSTSLSRQ DHSPITKTPN FIDYYNPPFI  300
SYHVGSQNCD SSSQLIPSLV VHADGSSILN VPSNTSKE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009797428.11e-175PREDICTED: NAC domain-containing protein 8-like
SwissprotO494591e-117NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A1U7Y2Q71e-174A0A1U7Y2Q7_NICSY; NAC domain-containing protein 8-like
STRINGXP_009797428.11e-175(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28752454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-119NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]