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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Peaxi162Scf00481g00721.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family |
MIKC_MADS |
Protein Properties |
Length: 246aa MW: 28242.1 Da PI: 8.714 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Peaxi162Scf00481g00721.1 | genome | SGN | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 96.3 | 1.3e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
k+ienk+nrqvtf+kRrng+lKKA+ELSvLC+aeva+iifs++gklye+ss
Peaxi162Scf00481g00721.1 9 KKIENKINRQVTFAKRRNGLLKKAYELSVLCEAEVALIIFSNRGKLYEFSS 59
68***********************************************96 PP
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2 | K-box | 84.6 | 2e-28 | 83 | 175 | 7 | 99 |
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91
+s++++++e+ ++e+ kLk+++e+Lqr qR+llG++L++L++ eL++Le qL++slk i+s++++l+l+q+++lq kek e+n
Peaxi162Scf00481g00721.1 83 RSVKDNNEERIYREYLKLKAKYESLQRYQRQLLGDELGPLNIDELEHLELQLDSSLKLIKSTRTQLMLDQLSDLQTKEKLWVEAN 167
44999******************************************************************************** PP
K-box 92 kaLrkkle 99
k L++kle
Peaxi162Scf00481g00721.1 168 KVLERKLE 175
******97 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00432 | 1.2E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.011 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.85E-43 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 1.44E-33 | 2 | 91 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.9E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 8.3E-24 | 86 | 174 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.628 | 90 | 180 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 246 aa
Download sequence Send
to blast |
MGRGRVELKK IENKINRQVT FAKRRNGLLK KAYELSVLCE AEVALIIFSN RGKLYEFSST 60 SNMVKTLDRY QKCSYGTLEV NHRSVKDNNE ERIYREYLKL KAKYESLQRY QRQLLGDELG 120 PLNIDELEHL ELQLDSSLKL IKSTRTQLML DQLSDLQTKE KLWVEANKVL ERKLEQIYAE 180 NNIQQSWGGG EQSGAYGQQH AQTQGFFQPL ECNSTLQIGY DPATSSQITA VTSGQNVNGI 240 IPGWML
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
4ox0_A | 2e-25 | 96 | 174 | 23 | 101 | Developmental protein SEPALLATA 3 |
4ox0_B | 2e-25 | 96 | 174 | 23 | 101 | Developmental protein SEPALLATA 3 |
4ox0_C | 2e-25 | 96 | 174 | 23 | 101 | Developmental protein SEPALLATA 3 |
4ox0_D | 2e-25 | 96 | 174 | 23 | 101 | Developmental protein SEPALLATA 3 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AF335235 | 0.0 | AF335235.1 Petunia x hybrida MADS-box transcription factor FBP5 (FBP5) mRNA, complete cds. |