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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00481g00052.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | C2H2 | ||||||||
Protein Properties | Length: 216aa MW: 24689.8 Da PI: 9.7137 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.5 | 2.4e-05 | 84 | 106 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C k F+++ L H++ H Peaxi162Scf00481g00052.1 84 YECNYCFKNFPTSQALGGHQNAH 106 99******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.7E-4 | 78 | 110 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.4E-5 | 81 | 111 | No hit | No description |
PROSITE profile | PS50157 | 11.572 | 84 | 111 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 4.5E-6 | 84 | 108 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 86 | 106 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MEKKRDFMKV ESFSQLPFIQ PPAVYKEKII IRLFGKEYCS GNTSMTSSNM FKSVVETNTV 60 NLANCIAKES YNVVNNIEES RKKYECNYCF KNFPTSQALG GHQNAHKKER QQTKGAHLHH 120 HHLTWTNNIS NSARFYGSHH VNYVTSRPYS KIGPTNGSPL AFCRVPPAAH QNYSNLFPND 180 DSKIFPKVKS STSESRFRYE PKAGVQDDHV SLDLHL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019267119.1 | 3e-65 | PREDICTED: zinc finger protein 8-like | ||||
TrEMBL | A0A314KZD0 | 3e-63 | A0A314KZD0_NICAT; Zinc finger protein 8 | ||||
STRING | XP_009619423.1 | 7e-63 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1473 | 15 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58070.1 | 6e-32 | C2H2 family protein |