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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00472g00033.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | S1Fa-like | ||||||||
Protein Properties | Length: 121aa MW: 14102.5 Da PI: 9.8293 | ||||||||
Description | S1Fa-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | S1FA | 117.7 | 4.7e-37 | 24 | 89 | 4 | 70 |
S1FA 4 akveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 + ve+kG+nPGli+llv + lll fl gny+ly+yaqk+lPP+kkkPvskkklkre+lkqGv++PGe Peaxi162Scf00472g00033.1 24 KDVEVKGFNPGLIILLV-AWLLLAFLFGNYLLYMYAQKTLPPKKKKPVSKKKLKRERLKQGVSAPGE 89 679**********9986.89**********************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04689 | 4.2E-35 | 26 | 89 | IPR006779 | DNA binding protein S1FA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 121 aa Download sequence Send to blast |
MDYEGDFGDN NPPPSFYRMK NMAKDVEVKG FNPGLIILLV AWLLLAFLFG NYLLYMYAQK 60 TLPPKKKKPV SKKKLKRERL KQGVSAPGES ILVTPWYTEY VWINSQEMVE PYDVPISHHH 120 R |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC254722 | 1e-43 | AC254722.3 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-53k5 map 10, complete sequence. | |||
GenBank | HG975522 | 1e-43 | HG975522.1 Solanum lycopersicum chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009627553.1 | 3e-28 | PREDICTED: DNA-binding protein S1FA-like | ||||
Refseq | XP_009781429.1 | 3e-28 | PREDICTED: DNA-binding protein S1FA-like | ||||
Refseq | XP_016432997.1 | 3e-28 | PREDICTED: DNA-binding protein S1FA-like | ||||
Refseq | XP_016471310.1 | 3e-28 | PREDICTED: DNA-binding protein S1FA-like | ||||
Swissprot | P42553 | 5e-12 | S1FA1_ORYSJ; DNA-binding protein S1FA1 | ||||
TrEMBL | A0A1S3WZD4 | 7e-27 | A0A1S3WZD4_TOBAC; DNA-binding protein S1FA-like | ||||
TrEMBL | A0A1S4A3X3 | 7e-27 | A0A1S4A3X3_TOBAC; DNA-binding protein S1FA-like | ||||
TrEMBL | A0A1U7X3I1 | 7e-27 | A0A1U7X3I1_NICSY; DNA-binding protein S1FA-like | ||||
STRING | XP_009781429.1 | 1e-27 | (Nicotiana sylvestris) | ||||
STRING | XP_009627553.1 | 1e-27 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3174 | 22 | 49 |