PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00468g00025.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | FAR1 | ||||||||
Protein Properties | Length: 482aa MW: 55316.5 Da PI: 6.9435 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 33.9 | 1.1e-10 | 86 | 168 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtklel 83 +fY+++Ak+ Fs++k++ kk+ ++ + it r++ C k gk+ + ++ +++++C+a + ++ + + wev+++ Peaxi162Scf00468g00025.1 86 NFYQDHAKKHRFSITKRSCKKQsSEYDLITARRLSCHKGGKPVRYQT----------SKKVDCEAGIYATLCSdRTSWEVQSVTV 160 6**************99998875777889***********9987655..........59*************9999********* PP FAR1 84 eHnHelap 91 + nH+l p Peaxi162Scf00468g00025.1 161 DNNHDLEP 168 *****975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.3E-7 | 86 | 168 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.1E-17 | 262 | 346 | IPR018289 | MULE transposase domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 482 aa Download sequence Send to blast |
MQSFMDVEES SSNSQAGLGN TASMLSQVLG VHQDDSLFDN RSNSSMAGEN NDPNVVTGEG 60 PGINPRAPAG GPTVGMKFHS LEAMVNFYQD HAKKHRFSIT KRSCKKQSSE YDLITARRLS 120 CHKGGKPVRY QTSKKVDCEA GIYATLCSDR TSWEVQSVTV DNNHDLEPRL SWLMAAHRKV 180 TPALMRDLVA PDRPGVRPCR SFRTMEIMNE GTENMGCLPR DWRNFINQHR KMRLKHDNER 240 QLRNVMWIHP QAFLVYQQFN DVIALDSPYK VNKYNMSFVM FVGMNHHGHS ILLGAELLSY 300 EDITTYRTRV RYMGGIEPGA ILTDQCETMG AAIREEFPTT THRLCICIYV QENQWLDDIY 360 SIRSQWVPVY LTDTFWAGMR PTQRSESMHA FFDQFITSRT NLLTFVMQYE VALKTKLDKD 420 LKEEENSKNT RLFSVTGSQW EEQLRAGLTQ NIYDMHRKQI QDSVGCNFVG FNEQDEVETF 480 SV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7498 | 2 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G15090.1 | 3e-43 | FAR1 family protein |