PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00465g00051.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family ARF
Protein Properties Length: 903aa    MW: 100212 Da    PI: 6.5674
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00465g00051.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.56.3e-24128228198
                               EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                               f+k+lt sd++++g +++p++ ae+       +++++++ +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+
  Peaxi162Scf00465g00051.1 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldySQQPPCQ-ELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDS 211
                               99*****************************97677775.9******************************************** PP

                               EEEEE-SSSEE..EEEEE- CS
                        B3  80 vvFkldgrsefelvvkvfr 98 
                               v+F   ++++ +l+++++r
  Peaxi162Scf00465g00051.1 212 VIFI--WNEKNQLFLGIRR 228
                               ****..8889999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.49E-49112257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-41121243IPR015300DNA-binding pseudobarrel domain
CDDcd100172.30E-22127223No hitNo description
PfamPF023626.7E-22128229IPR003340B3 DNA binding domain
PROSITE profilePS5086311.956128230IPR003340B3 DNA binding domain
SMARTSM010191.8E-22128230IPR003340B3 DNA binding domain
PfamPF065072.8E-34254337IPR010525Auxin response factor
PROSITE profilePS5174523.346770854IPR000270PB1 domain
SuperFamilySSF542771.83E-6770845No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 903 aa     Download sequence    Send to blast
MRISSAGFSQ QSPEGEKKCL NSELWHACAG PLVSLPALGS RVVYFPQGHS EQVAASTNKE  60
VDAHTPNHPS LNPQLICQLH NVTMHADVET DEVYAQMTLQ PLSPEEQKEA SFLPVDLGIP  120
NKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDYS QQPPCQELIA RDLHDNEWKF  180
RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVIFIWNEKN QLFLGIRRAF RPQTVMPSSV  240
LSSDSMHLGL LAAAAHAAAT NSRFTIFYNP RASPSDFVIP LAKYVKAVYH TRISVGMRFR  300
MLFETEESSV RRYMGTITGI SDFDPVRWPN SHWRSVKVGW DESMAGERQP RVSLWEIEPL  360
TTFPMYPSQF PLRLKRPWPQ GLPVLNGMKD DDMVMNTPVM WLRDVGDRGM HSIDFQGMGG  420
TPWMQRTIDV PMFGMQPDIY QAMAAAAALQ EIRAMDPSKQ ALSSLLQLQQ ANVVTTSPAG  480
LLNSQFLQQS QPQTAFFHSV VEGQSQAQAI SEPHSIQKQL QHQNSFNNIQ QQHRQPPQQQ  540
QTPLQQQQAI SQQVSSVSSF MNQLGSNSHS QQPSLQSFCS MQQESFSDPK VNPSANPVTN  600
PLHSLMGAVP QDEASHFLSV PRSSSLLSPT GWPPKRIAVD PVHPSAISQR ISPQVDQLGT  660
PSKNISQNSL SLPPFPGRGC SIDGNNDPHN HLLFGVNIDS PSLLMPNGMP NLRGVGSDCE  720
STNVPFASSN YMSNTGTDFS QNPVMASSGC IDESGFVQTF ENAGEEGAHN TFVKVYKTGS  780
FGRSLDITKF NSYHELRSEL ARMFGLEGLL EDPLRSGWQL VFVDRENDVL LLGDDPWPEF  840
VSSVWCIKIL SPQEVQQMGK QGLELLKSVS MSKLSNGIYD DFVNHPESRN ITSGITCIGA  900
LDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1561635847388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009627654.10.0PREDICTED: auxin response factor 6-like isoform X3
RefseqXP_016449913.10.0PREDICTED: auxin response factor 6-like
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A1S3YD380.0A0A1S3YD38_TOBAC; Auxin response factor
STRINGXP_009627652.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23682452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]