PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00463g00134.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family B3
Protein Properties Length: 634aa    MW: 70683.3 Da    PI: 8.7189
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00463g00134.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.54.2e-121771799
                              E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                        B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                              ++p +fa+++ ++ ++     le +sg++Wev++    + g+++ltkGW++F +   ++ g f++F ++g+s f  +v++f+ 
  Peaxi162Scf00463g00134.1  1 TIPEDFASRYCKNMQT--PAYLEVPSGQVWEVEV--VHSEGQIWLTKGWQDFSDYYSIDCGHFLMFGYNGSSHF--NVTIFDV 77
                              59********555434..59**************..999999**************************999999..9999985 PP
2B350.73.3e-16312392488
                               E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                        B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                                + ps+v++  +l++p kfa++h +++ +  +l+l+ +   sW+vk+  + +     ++ GWk Fv +n+Lk gD +vF++++ +
  Peaxi162Scf00463g00134.1 312 FMQPSYVNSPFNLSVPLKFAKKHFLENYG--DLVLRVRGRGSWSVKC--TPSTINAKIRCGWKAFVLDNKLKLGDACVFEVIKGT 392
                               6789*******************887555..7***************..999999*************************88643 PP
3B342.98.8e-14509597798
                               .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
                        B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
                               ps+ +   +l ++  fa ++ ++  ++ +l+l+     sW+v++  + +     + +GWk Fv +n+Lk gD++vF++++  ++ 
  Peaxi162Scf00463g00134.1 509 PSYLSIPYILNISSAFALKYLLE-DCG-DLVLRVIGRGSWSVRC--SIGTADAKIHSGWKAFVLDNKLKIGDVCVFEVIKGtDQL 589
                               444444477899999**999665.354.9***************..77777888***********************99664666 PP

                               ..EEEEE- CS
                        B3  91 elvvkvfr 98 
                                  v++fr
  Peaxi162Scf00463g00134.1 590 FIDVTIFR 597
                               66677766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.045178IPR003340B3 DNA binding domain
PROSITE profilePS5086313.366178IPR003340B3 DNA binding domain
CDDcd100172.16E-10176No hitNo description
PfamPF023625.1E-9176IPR003340B3 DNA binding domain
SuperFamilySSF1019363.53E-16278IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.6E-16278IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.9E-22301401IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-19304404IPR015300DNA-binding pseudobarrel domain
CDDcd100173.75E-19307401No hitNo description
SMARTSM010193.7E-12309403IPR003340B3 DNA binding domain
PROSITE profilePS5086312.703309403IPR003340B3 DNA binding domain
PfamPF023622.0E-14311392IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.9E-20495598IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-18496598IPR015300DNA-binding pseudobarrel domain
CDDcd100172.21E-17501597No hitNo description
SMARTSM010191.9E-9502599IPR003340B3 DNA binding domain
PROSITE profilePS5086311.491503599IPR003340B3 DNA binding domain
PfamPF023621.1E-10518596IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 634 aa     Download sequence    Send to blast
TIPEDFASRY CKNMQTPAYL EVPSGQVWEV EVVHSEGQIW LTKGWQDFSD YYSIDCGHFL  60
MFGYNGSSHF NVTIFDVSAS EIGYPYDADR GTCCAPKRDH SDNSTEILED IPRSHGAKGK  120
YSDFVEGSGK TSGHIPLGHS SKRIKQERDA EDDVSVDMQD VMSPSFTKKR QKVEYPDSAV  180
HGTCHAPKRG QIESGDSIEI LEDIPKSHRG KAKIHDMIAR SAENLVHGPL GPSKRKRQGE  240
DEDDISVDML TKRMDVENLN VLFEEGSEGC MKHKQKNKTV HNANKRVMNK ERAISYQKAR  300
AFKSKNPFII SFMQPSYVNS PFNLSVPLKF AKKHFLENYG DLVLRVRGRG SWSVKCTPST  360
INAKIRCGWK AFVLDNKLKL GDACVFEVIK GTKLIDVTIF PAAGSKSMHN IGGGEVPGVS  420
DGENKIDKTD VSLPHSQSKV VLTNKLKLPT GGSYGFNSKI KESCRAHEQQ SRVVSDKSKT  480
VMNKERTIAY QRAKAFQSKN PFIVSFMQPS YLSIPYILNI SSAFALKYLL EDCGDLVLRV  540
IGRGSWSVRC SIGTADAKIH SGWKAFVLDN KLKIGDVCVF EVIKGTDQLF IDVTIFRAAE  600
STSMHQTNGQ VSGVYVCKNK IIETEDSDPC ARPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-1847560021144B3 domain-containing transcription factor VRN1
4i1k_B1e-1847560021144B3 domain-containing transcription factor VRN1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755143e-32HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016473178.10.0PREDICTED: B3 domain-containing protein Os03g0619600-like
TrEMBLA0A1S4A9620.0A0A1S4A962_TOBAC; B3 domain-containing protein Os03g0619600-like
STRINGXP_009622136.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7591893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.11e-21related to vernalization1 1