PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00456g00213.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

HD-ZIP

Protein Properties

Length: 837aa MW: 93183.8 Da PI: 4.9803

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00456g00213.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.2	3.9e-20	99	154	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++e+e+lF+++++p+ ++r +L++ lgL+ rqVk+WFqNrR+++k Peaxi162Scf00456g00213.1 99 KKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSQDLGLKPRQVKFWFQNRRTQMK 154 688899***********************************************998 PP
2	START	160.1	1.7e-50	299	526	1	206
HHHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS..............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT CS START 1 elaeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.............dsgealrasgvvdmvlallveellddkeqW 72 ela++ ++elvk+ +a++p+W +s ++ g+evl +e s+ ++ea r s+vv+m++ +lv lld + +W Peaxi162Scf00456g00213.1 299 ELALSSMDELVKMCQAADPLWIRST-NDSGKEVLNLEEYSRMfpwpvgikqnsneLRIEATRSSAVVIMNSITLVDALLDAN-KW 381 578999*****************.77777777777777777888899999**************************. PP -TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE- CS START 73 detla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRa 145 e ++ +a+t++v++sg g lqlm++e+q+l+plvp R+ +f+Ry++q ++g+w+ivd +ds ++ +++ Peaxi162Scf00456g00213.1 382 VELFPsiisRAKTIQVVNSGvsghasGSLQLMFMEMQVLTPLVPtRECYFLRYCQQnVEEGTWAIVDFPLDSLHNNF-PPPFPYF 465 ******************************************************99*******99988877.5777777 PP EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 146 ellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 +++pSg++i++++ng+s+vtwveh++ +++ + +++++ v g+a+ga++w++ lqrqce+ Peaxi162Scf00456g00213.1 466 KRRPSGCIIQDMPNGYSRVTWVEHAEIEENPVNQIFNHYVTCGMAFGAQRWLSILQRQCER 526 7********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.1E-20	85	154	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.13E-18	89	157	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.892	96	156	IPR001356	Homeobox domain
SMART	SM00389	5.8E-19	97	160	IPR001356	Homeobox domain
Pfam	PF00046	1.1E-17	99	154	IPR001356	Homeobox domain
CDD	cd00086	7.04E-18	99	157	No hit	No description
PROSITE pattern	PS00027	0	131	154	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	43.887	290	529	IPR002913	START domain
SuperFamily	SSF55961	3.02E-33	291	528	No hit	No description
CDD	cd08875	9.45E-115	294	525	No hit	No description
Pfam	PF01852	5.6E-43	299	526	IPR002913	START domain
SMART	SM00234	1.7E-32	299	526	IPR002913	START domain
SuperFamily	SSF55961	1.0E-18	552	787	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048497	Biological Process	maintenance of floral organ identity
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 837 aa Download sequence Send to blast
MFGDCQLFSS MGMGGNTVSS DSLYSSSFQN PNFNFMTMGG NNLPFNIFPP IIPKEENGLL 60 IKSKEEMDSG SGSEHIEGMS GNELETTEQQ QQQQLQGKKK RYHRHTARQI QEMEALFKEC 120 PHPDDKQRLK LSQDLGLKPR QVKFWFQNRR TQMKAQQDRA DNAVLRAEND NLKNENYRLQ 180 AALRSIMCPS CGGPAMLGEM GYDEQQLRLE NARLKEEFER VCCLVSQFNG RPMQGLGPTA 240 PLLPPSLELD MSIFPRKFEE PMANCHDNMI PVPFMPENPQ FSGTAGPMIL EEEKSLAMEL 300 ALSSMDELVK MCQAADPLWI RSTNDSGKEV LNLEEYSRMF PWPVGIKQNS NELRIEATRS 360 SAVVIMNSIT LVDALLDANK WVELFPSIIS RAKTIQVVNS GVSGHASGSL QLMFMEMQVL 420 TPLVPTRECY FLRYCQQNVE EGTWAIVDFP LDSLHNNFPP PFPYFKRRPS GCIIQDMPNG 480 YSRVTWVEHA EIEENPVNQI FNHYVTCGMA FGAQRWLSIL QRQCERLASL MARNISDLGV 540 IPSPEARKSL MNLAQRMIKT FCMNISTSCG QSWTALSDSL EDTVRITTRK VTEPGQPNGL 600 ILSAVSTTWL PYNHFQVFDL LRDERRRAQL DVLSNGNSLH EVAHIANGSH PGNCISLLRI 660 NVASNSSQSV ELMLQESCTD DSGSLVVYTT VDVDAIQLAM NGEDPSCIPL LPLGFVITPV 720 GQTNCDSNIT NEVNSAEKKN FPIQESGGCL LTVGLQVLAS TIPTAKLNLS SVTAINHHLC 780 NTVQQINAAL TTTYGNTTCH DNSGIVPSYA DESAVTLPPP SQQQLLESKQ ADENSNS

Sequence ? help Back to Top

Protein Sequence Length: 837 aa Download sequence Send to blast

MFGDCQLFSS MGMGGNTVSS DSLYSSSFQN PNFNFMTMGG NNLPFNIFPP IIPKEENGLL  60
IKSKEEMDSG SGSEHIEGMS GNELETTEQQ QQQQLQGKKK RYHRHTARQI QEMEALFKEC  120
PHPDDKQRLK LSQDLGLKPR QVKFWFQNRR TQMKAQQDRA DNAVLRAEND NLKNENYRLQ  180
AALRSIMCPS CGGPAMLGEM GYDEQQLRLE NARLKEEFER VCCLVSQFNG RPMQGLGPTA  240
PLLPPSLELD MSIFPRKFEE PMANCHDNMI PVPFMPENPQ FSGTAGPMIL EEEKSLAMEL  300
ALSSMDELVK MCQAADPLWI RSTNDSGKEV LNLEEYSRMF PWPVGIKQNS NELRIEATRS  360
SAVVIMNSIT LVDALLDANK WVELFPSIIS RAKTIQVVNS GVSGHASGSL QLMFMEMQVL  420
TPLVPTRECY FLRYCQQNVE EGTWAIVDFP LDSLHNNFPP PFPYFKRRPS GCIIQDMPNG  480
YSRVTWVEHA EIEENPVNQI FNHYVTCGMA FGAQRWLSIL QRQCERLASL MARNISDLGV  540
IPSPEARKSL MNLAQRMIKT FCMNISTSCG QSWTALSDSL EDTVRITTRK VTEPGQPNGL  600
ILSAVSTTWL PYNHFQVFDL LRDERRRAQL DVLSNGNSLH EVAHIANGSH PGNCISLLRI  660
NVASNSSQSV ELMLQESCTD DSGSLVVYTT VDVDAIQLAM NGEDPSCIPL LPLGFVITPV  720
GQTNCDSNIT NEVNSAEKKN FPIQESGGCL LTVGLQVLAS TIPTAKLNLS SVTAINHHLC  780
NTVQQINAAL TTTYGNTTCH DNSGIVPSYA DESAVTLPPP SQQQLLESKQ ADENSNS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP009593	1e-103	AP009593.1 Solanum lycopersicum DNA, chromosome 8, clone: C08HBa0018O15, complete sequence.
GenBank	HG975520	1e-103	HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009786380.1	0.0	PREDICTED: homeobox-leucine zipper protein HDG5 isoform X1
Refseq	XP_009786381.1	0.0	PREDICTED: homeobox-leucine zipper protein HDG5 isoform X1
Refseq	XP_009786382.1	0.0	PREDICTED: homeobox-leucine zipper protein HDG5 isoform X1
Swissprot	Q9FJS2	0.0	HDG5_ARATH; Homeobox-leucine zipper protein HDG5
TrEMBL	A0A1U7XIT3	0.0	A0A1U7XIT3_NICSY; homeobox-leucine zipper protein HDG5 isoform X1
STRING	XP_009786380.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9020	22	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46880.1	0.0	homeobox-7

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Lung SC, et al. Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors. New Phytol., 2018. 218(1): p. 183-200 [PMID:29288621]