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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00454g00323.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | MYB_related | ||||||||
Protein Properties | Length: 580aa MW: 60489 Da PI: 9.3482 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.4 | 1.4e-07 | 174 | 219 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwq 45 r++W+ Ed l+ av++ G g+W+ I + Rt q+ rw Peaxi162Scf00454g00323.1 174 RKPWSDAEDMELIAAVQKCGEGNWANILKGDFkGDRTTSQLSQRWA 219 789************************9742224888888888885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.718 | 169 | 226 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.0E-13 | 170 | 225 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.1E-12 | 171 | 224 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.8E-9 | 173 | 224 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.1E-6 | 174 | 220 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 5.67E-15 | 175 | 223 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 580 aa Download sequence Send to blast |
MTVLTLLQEV AQVQDLKFDW DELVKKTTTG ITNAREYQML WRHLAYRHGL LDKLDDSAQP 60 MDDDSDLEYE LEALPPVSNE ASVEAAACVK VLIASGVPCD SDMPNENTVE APLTINIPNG 120 QTSRTGTDNS LNGTSVYGTK ITVPVTVPLP SVKAAEGLDT NGPASATFPA RRKRKPWSDA 180 EDMELIAAVQ KCGEGNWANI LKGDFKGDRT TSQLSQRWAT IRKRHGNTIG NGSQLSEAQL 240 AARHAMSMAL GDNLRAACPI STNAGPNVGG APSKSSHFAA AGNASGGPKS EHQQDLVPPK 300 PRVIPKIPST KPAISPDSMV KAAAVAAGAR ISTPAGASSL QNAALSKKVV HIMPGGTPAV 360 KSSVPGSTTG LPSNVHFIRT GLVSCPAGPS NASPSGPQQL PGQPHSLRPA SPAVQLNSAA 420 ATSRAHASSG VRGAPTSSPV TVLEVKTKVA TVQQNHTAVL SNKRNEKVEV NRAASKGNTP 480 QLQVLKDQTA ASGNLLAEKV EGKTLTSGDA VIEHGGKSKT SRIQVQEKLI IGLEAASSNS 540 IGKQGQASNK NENTKIDLTV ENSSVQGPAP ETCKKPFEGS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009795383.1 | 0.0 | PREDICTED: uncharacterized protein LOC104242090 | ||||
Refseq | XP_016460255.1 | 0.0 | PREDICTED: uncharacterized protein LOC107783722 | ||||
TrEMBL | A0A1S3Z703 | 0.0 | A0A1S3Z703_TOBAC; uncharacterized protein LOC107783722 | ||||
TrEMBL | A0A1U7XWR6 | 0.0 | A0A1U7XWR6_NICSY; uncharacterized protein LOC104242090 | ||||
STRING | XP_009795383.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3434 | 22 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09710.1 | 3e-75 | MYB_related family protein |