PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00451g00816.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family bHLH
Protein Properties Length: 85aa    MW: 9712.99 Da    PI: 6.6783
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00451g00816.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.71.5e-0616521854
                              HHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                       HLH 18 safeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                              +  ++L++ lP+ +   +s K s + +L+++++YI++L
  Peaxi162Scf00451g00816.1 16 ELVSKLQQFLPEiR-TRRSSKASASKVLQETCNYIRDL 52
                              56689*******77.799******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.293152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-71368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-71471IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MSSRRSSRIS DDQIIELVSK LQQFLPEIRT RRSSKASASK VLQETCNYIR DLNREVDDLS  60
DRLSQLLSTI DADSQEAAII RSLIM
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016559055.16e-44PREDICTED: transcription factor PRE6-like
RefseqXP_019258538.18e-44PREDICTED: transcription factor PRE5-like
SwissprotQ9LJX16e-37PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A1U8FK001e-42A0A1U8FK00_CAPAN; Transcription factor PRE5
TrEMBLA0A2G2XD161e-42A0A2G2XD16_CAPBA; Transcription factor PRE5
TrEMBLA0A2G3A6451e-42A0A2G3A645_CAPAN; transcription factor PRE6-like
TrEMBLA0A314LFI52e-42A0A314LFI5_NICAT; Transcription factor pre5
STRINGXP_009758713.15e-43(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35324161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.17e-17bHLH family protein