PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00449g00610.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family HD-ZIP
Protein Properties Length: 405aa    MW: 46194.7 Da    PI: 9.9415
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00449g00610.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.42.2e-17111165256
                               T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                               rk+ ++tk q   Lee F++++ ++ +++++LA++l++  rqV vWFqNrRa+ k
  Peaxi162Scf00449g00610.1 111 RKKLRLTKIQSALLEESFKQHSSLNPKQKQKLARELNVRPRQVEVWFQNRRARTK 165
                               678899***********************************************98 PP
2Homeobox38.91.5e-123113412656
                               -HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox  26 saeereeLAkklgLterqVkvWFqNrRakek 56 
                               s++++++LA++l++  rqV vWFqNrRa+ k
  Peaxi162Scf00449g00610.1 311 SHKQKQKLARELNVRPRQVEVWFQNRRARTK 341
                               789**************************98 PP
3HD-ZIP_I/II116.71.3e-37111202192
               HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 
                               +kk+rl+k q++lLEesF++++ L+p++K++lareL+++prqv+vWFqnrRARtk+kq+E d+e+Lk+ +++l++en++L ke +
  Peaxi162Scf00449g00610.1 111 RKKLRLTKIQSALLEESFKQHSSLNPKQKQKLARELNVRPRQVEVWFQNRRARTKLKQTEIDCEFLKKYCETLTDENRKLYKELQ 195
                               69*********************************************************************************** PP

               HD-ZIP_I/II  86 eLreelk 92 
                               eLr++lk
  Peaxi162Scf00449g00610.1 196 ELRKALK 202
                               ***9997 PP
4HD-ZIP_I/II90.42.1e-293113782592
               HD-ZIP_I/II  25 eperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                               ++++K++lareL+++prqv+vWFqnrRARtk+kq+E+d+e+Lk+ +++l++en++L ke +eLr++lk
  Peaxi162Scf00449g00610.1 311 SHKQKQKLARELNVRPRQVEVWFQNRRARTKLKQTEVDCEFLKKYCETLTHENRKLYKELQELRKALK 378
                               689*************************************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.74E-17101168IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-16106169IPR009057Homeodomain-like
PROSITE profilePS5007116.827107167IPR001356Homeobox domain
SMARTSM003894.1E-14109171IPR001356Homeobox domain
CDDcd000863.78E-14111168No hitNo description
PfamPF000467.8E-15111165IPR001356Homeobox domain
PROSITE patternPS000270142165IPR017970Homeobox, conserved site
SMARTSM003402.5E-18167211IPR003106Leucine zipper, homeobox-associated
SMARTSM003890.0053291347IPR001356Homeobox domain
PROSITE profilePS5007112.39311343IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-10311341IPR009057Homeodomain-like
CDDcd000861.64E-7311344No hitNo description
SuperFamilySSF466897.1E-10311351IPR009057Homeodomain-like
PfamPF000465.3E-10311341IPR001356Homeobox domain
PROSITE patternPS000270318341IPR017970Homeobox, conserved site
SMARTSM003406.9E-18343387IPR003106Leucine zipper, homeobox-associated
PfamPF021832.3E-7343377IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MGFGDNIDIC GTGLYLGLGF SSTANQRSRK PQGKGASLSF ESSLTSGLSN DQIYDQKAVN  60
HKVNISRASS KDIQYADLSC SYSHVSVKRE TDVCTNYYKE TDADDDGSNG RKKLRLTKIQ  120
SALLEESFKQ HSSLNPKQKQ KLARELNVRP RQVEVWFQNR RARTKLKQTE IDCEFLKKYC  180
ETLTDENRKL YKELQELRKA LKLAPQPLYM QRPTATATLT MCPSCERVMG FGDNINICGT  240
GLYLGLSFSS TANQRSRKPQ RKGASLTFES SLTLSLSKDQ IYDQKAVNHK VNISKASSKD  300
IQYADLSCSY SHKQKQKLAR ELNVRPRQVE VWFQNRRART KLKQTEVDCE FLKKYCETLT  360
HENRKLYKEL QELRKALKLA PQPLYMQLPT AAATLTMCPS CERVV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1335343RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009796334.11e-91PREDICTED: homeobox-leucine zipper protein HAT22-like
RefseqXP_016480425.11e-91PREDICTED: homeobox-leucine zipper protein HAT22-like
SwissprotP466043e-61HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A1S4AV253e-90A0A1S4AV25_TOBAC; homeobox-leucine zipper protein HAT22-like
TrEMBLA0A1U7YAP53e-90A0A1U7YAP5_NICSY; homeobox-leucine zipper protein HAT22-like
STRINGXP_009796334.15e-91(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.11e-63HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]