PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00444g00320.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | WRKY | ||||||||
Protein Properties | Length: 395aa MW: 44444.8 Da PI: 4.959 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 79.8 | 2.8e-25 | 221 | 279 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D+++WrKYGqK+++g+++pr+YYrC++ C ++k +ers +dp+++++ geH he Peaxi162Scf00444g00320.1 221 NDKWAWRKYGQKPIRGTPYPRNYYRCSTDkYCIARKYLERSPRDPSLFIVSLYGEHSHE 279 8*************************99989***************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 8.0E-25 | 210 | 281 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.667 | 215 | 281 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.7E-22 | 217 | 281 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.2E-27 | 220 | 280 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.5E-20 | 221 | 278 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 395 aa Download sequence Send to blast |
MGDNNWDLGA VVRKWNNRPT RDNTNNVGTE PVVPSLGLES VTFEKDDDWF NDYLSAIDDD 60 SSDTFEGLSL MFSSDDFPVA QQQTPVIQSP NSIITNPTSF PFAVDDVPKD QNETQPQLLQ 120 PIQTALLSQQ MFPPPPPPPP PPAVAVSAPA PQQMIPRRKP GRPPKRAKVF PSVTVPVARN 180 SRVIKTRKRS LMCEDDSPLS YRKNSPLLKV VREMTYDELL NDKWAWRKYG QKPIRGTPYP 240 RNYYRCSTDK YCIARKYLER SPRDPSLFIV SLYGEHSHEP PANINSLSGS TRSTKSIKDL 300 STVPDPTPSS YSSPSPVSGS SFSPVSPMTP MFDTESALPN KNHMMEQAEE EENKGGNEEE 360 KIDLIPNDFM IEDIFMSFEE LNGFAYNNYG KGRFL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-16 | 210 | 281 | 4 | 74 | WRKY transcription factor 1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016484380.1 | 2e-80 | PREDICTED: probable WRKY transcription factor 27 | ||||
TrEMBL | A0A1S4B603 | 4e-79 | A0A1S4B603_TOBAC; probable WRKY transcription factor 27 | ||||
STRING | XP_009630404.1 | 4e-79 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3668 | 13 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23550.1 | 2e-31 | WRKY family protein |