PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00427g00048.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family HD-ZIP
Protein Properties Length: 209aa    MW: 24250.4 Da    PI: 6.3068
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00427g00048.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.56.5e-2055106556
                               SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox   5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                               +++++eq++ Le+ F +++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  Peaxi162Scf00427g00048.1  55 RKLSDEQVNLLEQSFGNEHKLESERKDKLASELGLDPRQVAVWFQNRRARWK 106
                               5899***********************************************9 PP
2HD-ZIP_I/II1216.1e-3953143292
               HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                               +kr+ls+eqv+lLE+sF +e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++d+ + e++rLe+ev +
  Peaxi162Scf00427g00048.1  53 RKRKLSDEQVNLLEQSFGNEHKLESERKDKLASELGLDPRQVAVWFQNRRARWKSKKLEEEYSKLKSQHDTNVVEKCRLETEVLN 137
                               8************************************************************************************ PP

               HD-ZIP_I/II  87 Lreelk 92 
                               L+e+l 
  Peaxi162Scf00427g00048.1 138 LKEQLC 143
                               **9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.84448108IPR001356Homeobox domain
SMARTSM003897.1E-1951112IPR001356Homeobox domain
SuperFamilySSF466892.57E-1853117IPR009057Homeodomain-like
CDDcd000869.72E-1753109No hitNo description
Gene3DG3DSA:1.10.10.609.6E-2155115IPR009057Homeodomain-like
PfamPF000465.1E-1755106IPR001356Homeobox domain
PRINTSPR000318.3E-67988IPR000047Helix-turn-helix motif
PROSITE patternPS00027083106IPR017970Homeobox, conserved site
PRINTSPR000318.3E-688104IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MNNHLVADDE MALISQYYPA IYTQLMVPQQ GEKKPRRRRK KNKGEASGSG VFRKRKLSDE  60
QVNLLEQSFG NEHKLESERK DKLASELGLD PRQVAVWFQN RRARWKSKKL EEEYSKLKSQ  120
HDTNVVEKCR LETEVLNLKE QLCEAEKEIQ RLLLERSDGN SPSVSSFSME AAMEPPFLGE  180
FGMEGLDNVF YAQDTNSYVQ GLEWVNLYV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13240KKPRRRRKK
23654RRRKKNKGEASGSGVFRKR
33855RKKNKGEASGSGVFRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00473DAPTransfer from AT4G36740Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009590483.11e-113PREDICTED: homeobox-leucine zipper protein ATHB-40
RefseqXP_016433151.11e-113PREDICTED: homeobox-leucine zipper protein ATHB-40-like
SwissprotO232081e-79ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLA0A1S3X0371e-111A0A1S3X037_TOBAC; homeobox-leucine zipper protein ATHB-40-like
STRINGXP_009590483.11e-112(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12892480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18550.15e-66homeobox protein 21
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]