PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00424g00112.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C2H2
Protein Properties Length: 429aa    MW: 49476.1 Da    PI: 8.8891
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00424g00112.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.41.4e-065678123
                              EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                              y+C++C+ sF r  nL+ H r+H
  Peaxi162Scf00424g00112.1 56 YVCEICNLSFQREQNLQMHRRRH 78
                              9*********************9 PP
2zf-C2H217.11.6e-05142164123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ++C++C+k +  +s++k Hi+t+
  Peaxi162Scf00424g00112.1 142 WVCEKCSKGYAVQSDYKAHIKTC 164
                               58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139124.9E-65579IPR007087Zinc finger, C2H2
SuperFamilySSF576676.12E-65578No hitNo description
Gene3DG3DSA:3.30.160.606.2E-55697IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.6995678IPR007087Zinc finger, C2H2
SMARTSM003559.9E-45678IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805878IPR007087Zinc finger, C2H2
SMARTSM00355160106136IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.4E-4133163IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.12E-6137162No hitNo description
SMARTSM0035558142169IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MLASNSFLFP APSSEPFSSP ENGFIMKRKR RPAGTPDPDA QVVYLTAEML MESDRYVCEI  60
CNLSFQREQN LQMHRRRHKV PWKLKKKEED KNITIENMEQ VKKRVYVCPE PSCVHHDPCH  120
ALGDLVGIKK HFRRKHSNYK QWVCEKCSKG YAVQSDYKAH IKTCGTRGHS CDCGRVFSRV  180
ETFIEHQDSC KPQSTRECDV QKPKQPLLPQ TTYNPPHCFS NYSNFSGFGK EPHHPNHYSR  240
MPKNTTHPNL DLELFTSPNN QNTQHYSSLQ NEHPQQLNLS FDGQNHYQVQ HNEDKKEGRG  300
NFQEKTFMEE TAIQVLKLKG EANQILKIAM EQKAMAAEKR QEAKCLIELA NLEMAKAREI  360
KQQLLAEYSS ADQLLKSRAT MKSVGSHVMQ VTCSSCNKQL QTVSKEAACK EVYPSLTNYL  420
SSATYRRWN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-17140190555Zinc finger protein JACKDAW
5b3h_F3e-17140190555Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754441e-73HG975444.1 Solanum pennellii chromosome ch05, complete genome.
GenBankHG9755171e-73HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009616334.10.0PREDICTED: protein SHOOT GRAVITROPISM 5-like isoform X1
RefseqXP_016505250.10.0PREDICTED: protein SHOOT GRAVITROPISM 5-like isoform X1
SwissprotF4IPE31e-116IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5
TrEMBLA0A1S4CVU60.0A0A1S4CVU6_TOBAC; protein SHOOT GRAVITROPISM 5-like isoform X1
STRINGXP_009616334.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10222482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.11e-118C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kim JY,Ryu JY,Baek K,Park CM
    High temperature attenuates the gravitropism of inflorescence stems by inducing SHOOT GRAVITROPISM 5 alternative splicing in Arabidopsis.
    New Phytol., 2016. 209(1): p. 265-79
    [PMID:26256266]
  3. Ryu JY,Kim JY,Park CM
    Adaptive thermal control of stem gravitropism through alternative RNA splicing in Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1093715
    [PMID:26452406]
  4. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  5. Shi H, et al.
    Zinc finger of Arabidopsis thaliana 6 is involved in melatonin-mediated auxin signaling through interacting INDETERMINATE DOMAIN15 and INDOLE-3-ACETIC ACID 17.
    J. Pineal Res., 2018. 65(2): p. e12494
    [PMID:29607541]