PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00420g00827.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | B3 | ||||||||
Protein Properties | Length: 240aa MW: 27534.6 Da PI: 4.087 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 59.1 | 7.7e-19 | 37 | 127 | 1 | 87 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfv 80 f+k+l +sdv++++r+v+pkk ae++ +++ +e++ +t+ d +g +W+++++y +++s++yvl+ ++ +Fv+ +gL++gD + Peaxi162Scf00420g00827.1 37 FDKQLQNSDVSSLRRIVVPKKAAERYlpNLEIKEGFPITMDDMDGiHVWSFRYRYwpNNSSRMYVLE-NTGDFVQTHGLRQGDYF 120 89**************************555557888********9*********888899999999.***************** PP EEEE-SS CS B3 81 vFkldgr 87 ++++++ Peaxi162Scf00420g00827.1 121 ALHYNDQ 127 *998754 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd10017 | 8.07E-22 | 35 | 124 | No hit | No description |
SuperFamily | SSF101936 | 3.14E-20 | 35 | 130 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.0E-24 | 35 | 130 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 3.9E-16 | 37 | 127 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.375 | 37 | 139 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.0E-15 | 37 | 139 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0010116 | Biological Process | positive regulation of abscisic acid biosynthetic process | ||||
GO:0010262 | Biological Process | somatic embryogenesis | ||||
GO:0010373 | Biological Process | negative regulation of gibberellin biosynthetic process | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MLSCDHDTAN LILGIYESFN GLFMFQALEP TGFRFLFDKQ LQNSDVSSLR RIVVPKKAAE 60 RYLPNLEIKE GFPITMDDMD GIHVWSFRYR YWPNNSSRMY VLENTGDFVQ THGLRQGDYF 120 ALHYNDQKQI YGIEARKAGN GSVFSGYEAE DMILTDYAQA ADDGNGVLLN EGELDMSNFY 180 FPAMDNEMGM SFIYDTSFWN EPAFDFVGGP MTYYSTNVFP MPSFGSIEDS FSVDDFYDRA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9b_A | 7e-47 | 33 | 139 | 1 | 107 | B3 domain-containing transcription factor FUS3 |
6j9b_D | 7e-47 | 33 | 139 | 1 | 107 | B3 domain-containing transcription factor FUS3 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00382 | DAP | Transfer from AT3G26790 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC215600 | 8e-34 | AC215600.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0098J01, complete sequence. | |||
GenBank | HG975514 | 8e-34 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016455551.1 | 1e-153 | PREDICTED: B3 domain-containing transcription factor FUS3-like | ||||
TrEMBL | A0A1S3YTI4 | 1e-152 | A0A1S3YTI4_TOBAC; B3 domain-containing transcription factor FUS3-like | ||||
STRING | XP_009800270.1 | 1e-151 | (Nicotiana sylvestris) | ||||
STRING | XP_009599643.1 | 1e-151 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8045 | 21 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26790.1 | 5e-53 | B3 family protein |