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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00417g01020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | FAR1 | ||||||||
Protein Properties | Length: 152aa MW: 16939.5 Da PI: 10.3086 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 44.7 | 4.4e-14 | 11 | 85 | 1 | 68 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.......tekerrtraetrtgCkaklkv 68 +fY YA++ GFsvr+ + +ks+++++++++ fvCsk+g+r+++ + +k ++ + r +Ck Peaxi162Scf00417g01020.1 11 NFYLGYAHRNGFSVRRGRVTKSRKDQSVIDQAFVCSKNGFRAKNILEttdykilPKKDAKSYDNPRKDCKKATAF 85 6******************************************98887888888677777777778888765554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.8E-11 | 11 | 82 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MEFSSLDDAF NFYLGYAHRN GFSVRRGRVT KSRKDQSVID QAFVCSKNGF RAKNILETTD 60 YKILPKKDAK SYDNPRKDCK KATAFQQMKI QKGPGRESST LSSSPHLGLV EFLFAGKLLQ 120 DSYGALMAGL LMVVVKPGTL GDRKFNNMEG VA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025884722.1 | 2e-20 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A3Q7EE03 | 6e-19 | A0A3Q7EE03_SOLLC; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA645 | 8 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18960.1 | 2e-10 | FAR1-related sequence 12 |