PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00411g00039.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C2H2
Protein Properties Length: 302aa    MW: 33909.9 Da    PI: 10.1809
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00411g00039.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.0002289111123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ++C++Cg+ Fs    L  H+r+H
  Peaxi162Scf00411g00039.1  89 HECSICGMEFSLGQALGGHMRRH 111
                               78********************9 PP
2zf-C2H211.70.00081178200123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ++C+ C+k+F++   L  H  +H
  Peaxi162Scf00411g00039.1 178 FECKTCNKRFPSFQALGGHRASH 200
                               89**********99999998887 PP
3zf-C2H213.50.00022222244123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ++C++Cg+ Fs    L  H+r+H
  Peaxi162Scf00411g00039.1 222 HECSICGMEFSLGQALGGHMRRH 244
                               78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.1E-104569IPR007087Zinc finger, C2H2
SuperFamilySSF576675.08E-845111No hitNo description
PROSITE profilePS501579.4324572IPR007087Zinc finger, C2H2
SMARTSM003550.144567IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804767IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.4E-486114IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.6E-989114IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.69989116IPR007087Zinc finger, C2H2
SMARTSM003550.06789111IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028091111IPR007087Zinc finger, C2H2
SuperFamilySSF576673.1E-9178244No hitNo description
PfamPF139129.6E-13178202IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.118178205IPR007087Zinc finger, C2H2
SMARTSM003550.075178200IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280180200IPR007087Zinc finger, C2H2
PROSITE profilePS501579.473222244IPR007087Zinc finger, C2H2
PfamPF139124.3E-9222246IPR007087Zinc finger, C2H2
SMARTSM003550.067222244IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280224244IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MSSIKRSRSE EYGQVEAEAM ANCLMLLSKL NDHNTSKNQD HHNEFECKTC NKRFPSFQAF  60
GGHRASHKRT KVLAGAGQFL AQVKKNKMHE CSICGMEFSL GQALGGHMRR HRDENNKTLK  120
VARKTTMIPV LKKSNSSKRI FCLDLNLSPD DENVDLNLWP TTPSTSTTTT NQDHHNDFEC  180
KTCNKRFPSF QALGGHRASH KRPKLLVGAG EFLVQPSSKK MHECSICGME FSLGQALGGH  240
MRRHRAAIDE KSKAATKAMM IPVLKKSNSS KRIFCLDLNL TPRNEDVDLK LWPTAPISSP  300
FN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0066000.0AB006600.1 Petunia x hybrida mRNA for ZPT2-13, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016483048.16e-83PREDICTED: zinc finger protein ZAT12-like
SwissprotQ9SLD43e-34ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLO220851e-106O22085_PETHY; ZPT2-13
STRINGXP_009608410.14e-82(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.11e-36C2H2 family protein