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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00411g00026.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | C2H2 | ||||||||
Protein Properties | Length: 188aa MW: 21683.7 Da PI: 8.5825 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.6 | 0.00043 | 45 | 67 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+F++ L H +H Peaxi162Scf00411g00026.1 45 FECKTCNKRFPSFQALGGHRASH 67 89**********99999998887 PP | |||||||
2 | zf-C2H2 | 15.6 | 4.6e-05 | 86 | 108 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg++Fs L H+r+H Peaxi162Scf00411g00026.1 86 HECSICGMVFSLGQALGGHMRRH 108 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.868 | 45 | 72 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.19E-9 | 45 | 108 | No hit | No description |
SMART | SM00355 | 0.075 | 45 | 67 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.1E-12 | 45 | 68 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 47 | 67 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.7E-4 | 84 | 111 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.699 | 86 | 113 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.036 | 86 | 108 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 5.2E-10 | 86 | 111 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 88 | 108 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MSAMKRSREE DRQVEAEAMA NCASMLLSKI NDHKTSKNQD DWDDFECKTC NKRFPSFQAL 60 GGHRASHKRL KLLAGVGEQQ AKKKMHECSI CGMVFSLGQA LGGHMRRHRD ENNKSLKAER 120 KTMIPVLKKS NSNKRIFCLD LNLSPDDEDV DLKLWPTTLC FETCDDKDRT FWQANVNLDI 180 DPPNYKRY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009608410.1 | 1e-78 | PREDICTED: zinc finger protein ZAT12-like | ||||
Swissprot | Q9SLD4 | 4e-31 | ZAT11_ARATH; Zinc finger protein ZAT11 | ||||
TrEMBL | O22085 | 6e-85 | O22085_PETHY; ZPT2-13 | ||||
STRING | XP_009608410.1 | 4e-78 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA366 | 24 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37430.1 | 2e-33 | C2H2 family protein |