PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00393g00052.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | FAR1 | ||||||||
Protein Properties | Length: 547aa MW: 62229.6 Da PI: 6.0819 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 86 | 5.9e-27 | 95 | 197 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekd 73 fY+eYA+++GF++ +++s++sk+++e+++++f Cs++g+++e +k+ e++ +ra +t+Cka+++vk++ d Peaxi162Scf00393g00052.1 95 FYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYEKSanrprsrqgnkqdPENATGRRACAKTDCKASMHVKRRPD 179 9***************************************999999899999888776555556699****************** PP FAR1 74 gkwevtkleleHnHelap 91 gkw ++++e+eHnHel p Peaxi162Scf00393g00052.1 180 GKWLIHRFEKEHNHELLP 197 ***************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.8E-25 | 95 | 197 | IPR004330 | FAR1 DNA binding domain |
PROSITE profile | PS50966 | 9.409 | 269 | 305 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 5.0E-6 | 280 | 307 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009585 | Biological Process | red, far-red light phototransduction | ||||
GO:0010218 | Biological Process | response to far red light | ||||
GO:0042753 | Biological Process | positive regulation of circadian rhythm | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 547 aa Download sequence Send to blast |
MDIDLRLPSR DHDKEEEEEE EEEEQNGIIN MLDNEEKLHS DEGMHGMLVV EEKMHAEDGE 60 DMDNPITNMI EFKEDVNLEP LAGMEFESHG EAYAFYQEYA RSMGFNTAIQ NSRRSKTSRE 120 FIDAKFACSR YGTKREYEKS ANRPRSRQGN KQDPENATGR RACAKTDCKA SMHVKRRPDG 180 KWLIHRFEKE HNHELLPAQA VSEQTRRMYA AMARQFAEYK NVVGLYTHAV FKKFQGEVLG 240 AVACIPKREK QDETTITFRV QDFEKDQEFI VTLNEVKSEV SCICHLFELK GYLCRHTLIV 300 LQICGVSSIP SQYILKRWTK DAKSKYSVSD GSEDVQSRVH RYNELCQRAM KLSEEGSLSQ 360 ESFSFALRAL DDAFGSCVTF NNSNKNMLEA GTSAAPGLLC VEDDNQSRSM SKTNKKKNNF 420 TKKRKVNSEA DVMTVGAADN LQQMDKLNSR PVTLDGYFGA QQGVQGMVQL NLMAPTRDNY 480 YGNQQTIQGL GQLNSIAPTH DGYYGAQPAM HGLGQMDFFR APSFPYGIRD EPNVRSAQLH 540 DEASRHP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. When associated with PHYA, protects it from being recognized and degraded by the COP1/SPA complex. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:12753585, ECO:0000269|PubMed:17012604, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:18715961, ECO:0000269|PubMed:22634759}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00078 | ChIP-seq | Transfer from AT3G22170 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. Up-regulated by white light. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:22634759}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT013715 | 0.0 | BT013715.1 Lycopersicon esculentum clone 132560F, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009804948.1 | 0.0 | PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X3 | ||||
Refseq | XP_009804949.1 | 0.0 | PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X3 | ||||
Refseq | XP_016481998.1 | 0.0 | PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like isoform X3 | ||||
Refseq | XP_016481999.1 | 0.0 | PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like isoform X3 | ||||
Swissprot | Q9LIE5 | 1e-130 | FHY3_ARATH; Protein FAR-RED ELONGATED HYPOCOTYL 3 | ||||
TrEMBL | A0A0A0KV81 | 0.0 | A0A0A0KV81_CUCSA; Uncharacterized protein | ||||
STRING | XP_009804946.1 | 0.0 | (Nicotiana sylvestris) | ||||
STRING | XP_009610341.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA496 | 21 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22170.2 | 1e-129 | far-red elongated hypocotyls 3 |