PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00392g00315.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family B3
Protein Properties Length: 346aa    MW: 38898.6 Da    PI: 9.2316
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00392g00315.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.51.9e-165811799
                              E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                        B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                               +p kf+++  +k      ++l+ +sg +W+v l  +  +++ +++ GWkeFv+a+ L+e Df++Fk++g+s+f   v++f+k
  Peaxi162Scf00392g00315.1  5 AIPQKFVNNLREK--LAGSVSLKGPSGATWNVGL--TLDGDALLFKHGWKEFVDAHILEEDDFLIFKYNGDSRF--DVSMFDK 81
                              59*****655544..4457***************..888889****************************9999..9999987 PP
2B341.91.8e-13203288494
                               E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                        B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                               v+ ps+v k   +++p + a +++++  +s +++l+  + ++W+ +l    k+ ++ lt+GWk+Fv +n L+e D++vF l+  +
  Peaxi162Scf00392g00315.1 203 VMRPSHVYKAFFMSIPSEWA-RINLPR-RSGDVMLRV-KENTWQARL--LDKGYTCGLTGGWKNFVIENFLEEFDVCVFNLTTGE 282
                               6889****************.565664.556888776.899******..66666788***********************99667 PP

                               EE..EE CS
                        B3  89 efelvv 94 
                               ++ + +
  Peaxi162Scf00392g00315.1 283 DGAPIL 288
                               766654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086315.495182IPR003340B3 DNA binding domain
SMARTSM010194.3E-8182IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.7E-18581IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-17581IPR015300DNA-binding pseudobarrel domain
PfamPF023623.7E-13581IPR003340B3 DNA binding domain
CDDcd100172.01E-14680No hitNo description
Gene3DG3DSA:2.40.330.102.6E-17198294IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.35200296IPR003340B3 DNA binding domain
SMARTSM010197.1E-9200296IPR003340B3 DNA binding domain
SuperFamilySSF1019363.34E-15201294IPR015300DNA-binding pseudobarrel domain
CDDcd100177.20E-16203294No hitNo description
PfamPF023624.7E-12203288IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MKLQAIPQKF VNNLREKLAG SVSLKGPSGA TWNVGLTLDG DALLFKHGWK EFVDAHILEE  60
DDFLIFKYNG DSRFDVSMFD KQSFCEKEAS YFVKKCAHTD AVSGGKTKRS IPESYVSANE  120
SSHEVFESTP RKKPRKNGAC TPTSRTRANG KLRTREIKST SSTTMRGYPL LLKSNRRAVN  180
EEEKKKAFDM ATAAVTENSL RIVMRPSHVY KAFFMSIPSE WARINLPRRS GDVMLRVKEN  240
TWQARLLDKG YTCGLTGGWK NFVIENFLEE FDVCVFNLTT GEDGAPILDV SIFRVVEEVI  300
PPSLVTPASS SKGLEIWNCN RPKLHVCYPD TGCCWVTFLV KLAAIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-1617429922146B3 domain-containing transcription factor VRN1
4i1k_B2e-1617429922146B3 domain-containing transcription factor VRN1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028061149.11e-113B3 domain-containing protein REM16
TrEMBLA0A2R6RN221e-107A0A2R6RN22_ACTCH; B3 domain-containing protein
STRINGXP_010059782.12e-84(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13043817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-46B3 family protein