PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00390g00329.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

Protein Properties

Length: 853aa MW: 94394 Da PI: 6.3208

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00390g00329.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	60.5	2.8e-19	327	426	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvv 81 f+kvl+ sd+++ grlvlpk +ae++ +++ e+ ++++d +g++W++++++ +++s++yvl+ G + +L++gD+v+ Peaxi162Scf00390g00329.1 327 FEKVLSASDAGRIGRLVLPKACAEAYfpPINQSEGLPIRIQDIKGKEWTFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDTVI 410 99************************666667778***********99899999999.*************** PP EEE-SSSEE..EEEEE- CS B3 82 Fkldgrsefelvvkvfr 98 F++++ +++lv+++++ Peaxi162Scf00390g00329.1 411 FSRID-PGGKLVMGFRK 426 887.78878888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.96E-21	324	429	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	7.3E-30	324	430	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.23E-24	325	426	No hit	No description
SMART	SM01019	1.7E-21	327	427	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.3E-16	327	426	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.321	327	428	IPR003340	B3 DNA binding domain
PROSITE profile	PS51050	14.202	552	602	IPR011124	Zinc finger, CW-type
Pfam	PF07496	2.3E-12	557	599	IPR011124	Zinc finger, CW-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 853 aa Download sequence Send to blast
MGSMICMNEL CRATTSSEWK KGWGLKSGGF AKLCYNCGSA FENLVFCETF HLEESGWREC 60 RTCRKRVHCG CIASKYLYEY LDYGGVGCIS CMSHLDGHSI RPIQFFYEIP GDDLPNGTLG 120 TKSAPPLGVE NKMDENNFDK RRGMRLSKPV ETSEPGQLFQ TPKNDIKQET MLPIGNVSTC 180 FSNLSPQPIG ASLFGKPDND IPSQGVKDMF DSINQPSLNF SLSTPISTSN SGQPFLGGDV 240 EGREQSKNSP FQQGQRTRHI LPKPPKPSPN SGSESNKGMA SQQRIARPPA EGRGGRNQLL 300 PRYWPRITDQ ELQQLSGDLK STIVPLFEKV LSASDAGRIG RLVLPKACAE AYFPPINQSE 360 GLPIRIQDIK GKEWTFQFRF WPNNNSRMYV LEGVTPCIQN MQLQAGDTVI FSRIDPGGKL 420 VMGFRKATNN VDIPDTQTSN LPNGNGSAET SFTGITENLT NGARTSDDSV NRQVPISDKK 480 KARNIGSKNK RLHMHADDAM ELRITWEEAQ ELLRPPPTNN DPTIVKIEDC EFEEYNEPPV 540 FGKRTIFTAR SSGDQEQWAQ CDSCTKWRRL PVHVLLPAKW TCSDNVWDSK RSSCAAPDEI 600 NPRELEAFFR VDKDLKRQKL VENNEDCEPS GLDALAALAV LGDNIGDLGE PSVGATTKHP 660 RHRPGCSCIV CIQPPSGKGK HPPTCKCNVC LTVKRRFKTL MLRKKKKQSE REAELAQAKD 720 QIPSKDESEI DGASGTDLLH MNHAENENMN HSENERNSNG DQTEEFGAGK GQLDLNCHPN 780 RDDDMLVEAT AGMSMTSLVN AANLPLEYLT QNGLESLANS LLSQTAGESE VRHPDNGFMK 840 TADAEKDNKG DEG

Sequence ? help Back to Top

Protein Sequence Length: 853 aa Download sequence Send to blast

MGSMICMNEL CRATTSSEWK KGWGLKSGGF AKLCYNCGSA FENLVFCETF HLEESGWREC  60
RTCRKRVHCG CIASKYLYEY LDYGGVGCIS CMSHLDGHSI RPIQFFYEIP GDDLPNGTLG  120
TKSAPPLGVE NKMDENNFDK RRGMRLSKPV ETSEPGQLFQ TPKNDIKQET MLPIGNVSTC  180
FSNLSPQPIG ASLFGKPDND IPSQGVKDMF DSINQPSLNF SLSTPISTSN SGQPFLGGDV  240
EGREQSKNSP FQQGQRTRHI LPKPPKPSPN SGSESNKGMA SQQRIARPPA EGRGGRNQLL  300
PRYWPRITDQ ELQQLSGDLK STIVPLFEKV LSASDAGRIG RLVLPKACAE AYFPPINQSE  360
GLPIRIQDIK GKEWTFQFRF WPNNNSRMYV LEGVTPCIQN MQLQAGDTVI FSRIDPGGKL  420
VMGFRKATNN VDIPDTQTSN LPNGNGSAET SFTGITENLT NGARTSDDSV NRQVPISDKK  480
KARNIGSKNK RLHMHADDAM ELRITWEEAQ ELLRPPPTNN DPTIVKIEDC EFEEYNEPPV  540
FGKRTIFTAR SSGDQEQWAQ CDSCTKWRRL PVHVLLPAKW TCSDNVWDSK RSSCAAPDEI  600
NPRELEAFFR VDKDLKRQKL VENNEDCEPS GLDALAALAV LGDNIGDLGE PSVGATTKHP  660
RHRPGCSCIV CIQPPSGKGK HPPTCKCNVC LTVKRRFKTL MLRKKKKQSE REAELAQAKD  720
QIPSKDESEI DGASGTDLLH MNHAENENMN HSENERNSNG DQTEEFGAGK GQLDLNCHPN  780
RDDDMLVEAT AGMSMTSLVN AANLPLEYLT QNGLESLANS LLSQTAGESE VRHPDNGFMK  840
TADAEKDNKG DEG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9a_A	9e-69	305	433	2	130	B3 domain-containing transcription repressor VAL1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	693	704	KRRFKTLMLRKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC226726	1e-178	AC226726.1 Solanum lycopersicum chromosome 6 clone C06HBa0057D21, complete sequence.
GenBank	HG975518	1e-178	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009772834.1	0.0	PREDICTED: B3 domain-containing transcription repressor VAL1-like
Swissprot	Q6Z3U3	0.0	Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBL	A0A1U7WDV9	0.0	A0A1U7WDV9_NICSY; B3 domain-containing transcription repressor VAL1-like
STRING	XP_009772834.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1491	23	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	0.0	HSI2-like 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]