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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00386g00511.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | C3H | ||||||||
Protein Properties | Length: 458aa MW: 48016.9 Da PI: 8.7129 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 37.6 | 3.8e-12 | 20 | 44 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +++rtG+C yG+rC+F+H++ Peaxi162Scf00386g00511.1 20 EPDCIYYLRTGFCGYGSRCRFNHPR 44 799********************96 PP | |||||||
2 | zf-CCCH | 38 | 2.7e-12 | 65 | 90 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C++++rtG Ck+G++Ck++H++ Peaxi162Scf00386g00511.1 65 GQPVCQYYMRTGMCKFGASCKYHHPR 90 5789********************96 PP | |||||||
3 | zf-CCCH | 34.3 | 4e-11 | 111 | 136 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ +tG+Ck+G +CkF+H++ Peaxi162Scf00386g00511.1 111 GEKECSYYVKTGQCKFGITCKFHHPQ 136 7899********************97 PP | |||||||
4 | zf-CCCH | 36.5 | 8.4e-12 | 281 | 306 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C++++++G CkyG++C+++H+ Peaxi162Scf00386g00511.1 281 PGQPECQYYMKYGDCKYGSSCRYHHP 306 5789*********************9 PP | |||||||
5 | zf-CCCH | 35.7 | 1.4e-11 | 329 | 353 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++C+++a++G Ck+G++CkF H++ Peaxi162Scf00386g00511.1 329 APICSHYAQNGVCKFGPSCKFDHPM 353 589********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 7.5E-6 | 17 | 44 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.896 | 17 | 45 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-9 | 20 | 44 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-6 | 21 | 46 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-5 | 23 | 44 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.2E-6 | 63 | 90 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.845 | 63 | 91 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-6 | 64 | 90 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.1E-9 | 65 | 90 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.8E-5 | 68 | 90 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.3E-5 | 109 | 136 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.371 | 109 | 137 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.59E-6 | 111 | 137 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-8 | 111 | 136 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.8E-4 | 115 | 135 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.2E-5 | 280 | 307 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.07 | 280 | 308 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.0E-9 | 282 | 306 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.31E-5 | 284 | 308 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.15E-6 | 325 | 352 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.8E-7 | 326 | 353 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.878 | 326 | 354 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.6E-9 | 329 | 353 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.9E-5 | 331 | 351 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 458 aa Download sequence Send to blast |
MWQLTLGNTG PESYPERPNE PDCIYYLRTG FCGYGSRCRF NHPRDRNSVL GAMRATGGEY 60 PERMGQPVCQ YYMRTGMCKF GASCKYHHPR QGGGSPAPVT VNIYGYPLRP GEKECSYYVK 120 TGQCKFGITC KFHHPQPAGA QVPAPAAGPG PMTAPAAVPA PHIYPAVQSP SVQSAQQYGV 180 VSGNWPVARP TLLPGSYIPG TYGSMLLPPG MVPLPGWTPY PAPVSPVPSQ STQPAAAAGP 240 IYGLSQLSPS APAYTGPYLS VASSGGPSSS SQKEHAFPER PGQPECQYYM KYGDCKYGSS 300 CRYHHPTEWS GPKTSFILSA MGLPLRPGAP ICSHYAQNGV CKFGPSCKFD HPMGMSYSPS 360 ASSLADMAIA PYPVGSSIGT LAPSSSSSDL RPELASGSGR DAFSTQISSM STSSGSVGSM 420 FSKSGPASHS GIQQSVQSSN PSSGSSSSGH GGEARTSS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC243712 | 1e-126 | AC243712.4 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-44j2 map 1, complete sequence. | |||
GenBank | HG975513 | 1e-126 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004229205.1 | 0.0 | zinc finger CCCH domain-containing protein 34 | ||||
Swissprot | Q84W91 | 1e-159 | C3H32_ARATH; Zinc finger CCCH domain-containing protein 32 | ||||
TrEMBL | A0A3Q7EGL4 | 0.0 | A0A3Q7EGL4_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g067550.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2412 | 24 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18550.1 | 1e-119 | C3H family protein |