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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00382g00711.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | LBD | ||||||||
Protein Properties | Length: 228aa MW: 25575.3 Da PI: 7.4498 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 33.3 | 1.4e-10 | 4 | 46 | 1 | 38 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFG 38 +C++C+vlr++C+++C l+p++ p++q++++ +++k++G Peaxi162Scf00382g00711.1 4 SCNGCRVLRKGCSDNCSLRPCLqwiksPDSQANATVFLAKFYG 46 6*****************************************9 PP | |||||||
2 | DUF260 | 32 | 3.5e-10 | 48 | 89 | 57 | 98 |
DUF260 57 amsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +++sl+yeA+ r+ +Pv+G+vg++ +++++ +q+++e++ + Peaxi162Scf00382g00711.1 48 IFKSLLYEACGRIINPVHGSVGLMCSGNWKRCQEAVEAVFKG 89 799********************************9988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03195 | 7.3E-7 | 4 | 47 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.8E-6 | 48 | 85 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCSDNCS LRPCLQWIKS PDSQANATVF LAKFYGHIFK SLLYEACGRI 60 INPVHGSVGL MCSGNWKRCQ EAVEAVFKGS TIMEFPINNE EDSTSHEVPH QIIPFKGCDI 120 RHLSKNSSGQ FHEVKIRNRF KRKATKVDKV YVPVVAEEYL TNEPSKFSIT GWDFGQIEDE 180 LKRAASHDSF SVETVEPSLV NRAEPVLPVK LEEVGHEAGL ELTLGLMT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019255294.1 | 1e-115 | PREDICTED: LOB domain-containing protein 42-like | ||||
Swissprot | Q9M886 | 1e-50 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | A0A1J6HYJ8 | 1e-114 | A0A1J6HYJ8_NICAT; Lob domain-containing protein 42 | ||||
STRING | XP_009777707.1 | 1e-114 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA886 | 24 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68510.1 | 4e-53 | LOB domain-containing protein 42 |