PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00380g00016.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family bHLH
Protein Properties Length: 342aa    MW: 38417.9 Da    PI: 6.4547
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00380g00016.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.23.4e-14152198354
                               HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                       HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                               ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  Peaxi162Scf00380g00016.1 152 KSHSEAERRRRERINNHLAKLRSLLPNT-----TKTDKASLLAEVIQHVKEL 198
                               79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.136149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-11152198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.33E-15153205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-15153207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-13155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.88E-5162201No hitNo description
Gene3DG3DSA:3.30.70.2602.9E-4235286No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MSDKKEEDQE GYCSHQAIQN LQQCIQQQLL LHQQENMQPQ SFNPVHFSSN TEMSQILPWT  60
LPPVQSFNQV HHDPFLLPPA PSSYGGYLFN RRPQFGYHHE GTSSDHLRFI SDTLVGQVVH  120
HQPGSAPFGL QAELQKMTAQ EIMDAKALAA SKSHSEAERR RRERINNHLA KLRSLLPNTT  180
KTDKASLLAE VIQHVKELKR QTSLIAETSP VPTEIDELTV DNASDEDGKF VIKASLCCED  240
RSDLLPDLIK TLKALRLKTL KAEITTLGGR VRNVLFITGD NNNYNQDDQD SSNTSTDDHQ  300
QHQYSISSIQ EALKAVMEKS SGDDSSSASV KRQRTNNINI LS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157162ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755173e-80HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019257664.10.0PREDICTED: transcription factor bHLH30-like
SwissprotQ9S7Y16e-99BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A1S4C6320.0A0A1S4C632_TOBAC; transcription factor bHLH30-like
STRINGXP_009761017.11e-178(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40832444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.13e-74bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]