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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00358g01213.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | bHLH | ||||||||
Protein Properties | Length: 229aa MW: 25650.8 Da PI: 8.0466 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.5 | 1.8e-11 | 175 | 223 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + ++ Ka++L + ++YI+sL+ Peaxi162Scf00358g01213.1 175 SHSLAERVRREKISERMKILQSLVPGC---DKVISGKAQMLDEIINYIQSLE 223 8**************************...9*******************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 7.21E-9 | 169 | 227 | No hit | No description |
SuperFamily | SSF47459 | 9.55E-15 | 169 | 227 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.656 | 171 | 222 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.1E-15 | 175 | 227 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.1E-9 | 175 | 223 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.8E-10 | 177 | 228 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MAPAFSYLHQ SDDCLLDSSV VFPSFPIDIS EFLEVLNNPG TSQNRCFQNS QQQLAVNVST 60 VQESSNSNES TITNKSSSTI LEMESSAVML TNRMEISKES VAPIDRNRTT REGPSSRSFS 120 QSENIRDTDN GKKLRKSKDQ LTKEVKAKKG KWEDKKEAPT GYISVRAKRG QATDSHSLAE 180 RVRREKISER MKILQSLVPG CDKVISGKAQ MLDEIINYIQ SLENQVEVI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001311839.1 | 1e-57 | transcription factor bHLH137-like | ||||
Refseq | XP_016567722.1 | 1e-57 | PREDICTED: transcription factor bHLH137-like isoform X1 | ||||
TrEMBL | A0A0B5E953 | 3e-56 | A0A0B5E953_CAPAN; Transcription factor Upa20 | ||||
TrEMBL | A0A1U8G8R9 | 3e-56 | A0A1U8G8R9_CAPAN; transcription factor bHLH137-like isoform X1 | ||||
TrEMBL | A8TLW5 | 3e-56 | A8TLW5_CAPAN; BHLH transcription factor Upa20 | ||||
STRING | PGSC0003DMT400051137 | 2e-51 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA25269 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50915.2 | 6e-34 | bHLH family protein |