PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00354g00048.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | GATA | ||||||||
Protein Properties | Length: 284aa MW: 31933.8 Da PI: 9.7234 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 58.1 | 1.2e-18 | 147 | 180 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C+ C+ttkTplWR gp g+k+LCnaCG+++rk + Peaxi162Scf00354g00048.1 147 CADCNTTKTPLWRGGPKGPKSLCNACGIRQRKAR 180 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 3.2E-19 | 141 | 192 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.38E-12 | 144 | 182 | No hit | No description |
PROSITE profile | PS50114 | 12.308 | 145 | 177 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 2.1E-15 | 145 | 181 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 5.36E-11 | 146 | 176 | No hit | No description |
Pfam | PF00320 | 2.4E-16 | 147 | 180 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 147 | 172 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MTPNYRNFPP IFPFELNSED HDLSHPLVSP NYQASSSSSH SSCQMFFNSA TQYQTGHHDH 60 TEFFLPEYQP KVDNYASSGG SYDLEKKNKA ESDINLTLWK RKDRDEKNMR LKQKLEDQKQ 120 QSSTRLETDH SSNSSSNNSN NFPIRVCADC NTTKTPLWRG GPKGPKSLCN ACGIRQRKAR 180 KAMAAAAAAA EGTTLTTEKS TVGKIKLKKK EKTTNLIATN HIKPYKKRWR LLDTTDGSSS 240 SSDSQNKKLR FEDLFTNLSK KLAVNFPEDE KEAAILLMAL SCGL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016488017.1 | 2e-76 | PREDICTED: putative GATA transcription factor 22 | ||||
TrEMBL | A0A1S4BGN5 | 4e-75 | A0A1S4BGN5_TOBAC; putative GATA transcription factor 22 | ||||
STRING | XP_009604300.1 | 8e-70 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3097 | 22 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26150.1 | 4e-17 | cytokinin-responsive gata factor 1 |