PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Peaxi162Scf00350g00610.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 255aa MW: 28315.5 Da PI: 9.4091 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.6 | 5.9e-05 | 144 | 167 | 32 | 55 |
..TTS-STCHHHHHHHHHHHHHHH CS HLH 32 kapskKlsKaeiLekAveYIksLq 55 +++s++ +Ka +L +++eY+++Lq Peaxi162Scf00350g00610.1 144 HNKSERTNKALMLDEVIEYMRQLQ 167 5699*******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.94E-4 | 124 | 171 | No hit | No description |
SuperFamily | SSF47459 | 8.51E-6 | 139 | 183 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.0E-6 | 146 | 175 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 255 aa Download sequence Send to blast |
MHGLGPLHLL NNKPLSNSSP TQYTWDHHKP QVGGTLESIV NQATGIPHHR PKSPVDDIGG 60 DRGDELMSWF DTYIANTMTR YALVPSYTNT QNSHQRVAPS THVPSISGTC LVGCPTHGEV 120 EEEDNEKQSK VSSSTKRRRV AIKHNKSERT NKALMLDEVI EYMRQLQAQV QAMSNTMMYP 180 MMLPVAVQQQ LQMSMMAPAM RMRMVALTRP NATATPVVLH PTTSFMPITS AVSPRGRVNV 240 ANISCCSKSF IYLSI |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 135 | 139 | KRRRV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008375804.1 | 5e-29 | transcription factor UNE10 isoform X2 | ||||
TrEMBL | A0A498JF35 | 1e-33 | A0A498JF35_MALDO; Uncharacterized protein | ||||
STRING | XP_009762879.1 | 6e-26 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15785 | 2 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G00050.1 | 3e-11 | bHLH family protein |