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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00346g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | B3 | ||||||||
Protein Properties | Length: 166aa MW: 19461.4 Da PI: 10.3889 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 44.7 | 2.5e-14 | 17 | 94 | 10 | 99 |
HHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 10 vlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 +k+g l +p f+ ++ +g ++e + + ++W vkl ++++ l++GW++F+++++L gD++vF+++g++ef v+ Peaxi162Scf00346g00005.1 17 GFKNG-LKIPTGFL-KYlKGHEHE---RAILRRGCKKWLVKL--NGQR----LEEGWEKFAEQHDLHLGDILVFRHEGDMEF--DVS 90 55665.********.564555444...34455677*******..8887....************************999999..999 PP EE-S CS B3 96 vfrk 99 +f++ Peaxi162Scf00346g00005.1 91 IFDS 94 9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.6E-22 | 4 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.45E-19 | 4 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.505 | 7 | 95 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 8.44E-15 | 8 | 93 | No hit | No description |
SMART | SM01019 | 1.1E-13 | 10 | 95 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.8E-11 | 18 | 94 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MKVPPKKPHF FKPIVPGFKN GLKIPTGFLK YLKGHEHERA ILRRGCKKWL VKLNGQRLEE 60 GWEKFAEQHD LHLGDILVFR HEGDMEFDVS IFDSSQCNRK YAEYLQEKAQ EAHTVEETFK 120 NFEFKEKRRP KDIKSSKKDS FHAKAATNHR KPLGQSRCTK DKGRGI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018623217.1 | 2e-75 | PREDICTED: B3 domain-containing protein REM5-like isoform X1 | ||||
Refseq | XP_018623218.1 | 7e-76 | PREDICTED: B3 domain-containing protein REM5-like isoform X2 | ||||
TrEMBL | A0A1S3ZKL3 | 2e-69 | A0A1S3ZKL3_TOBAC; B3 domain-containing protein REM10-like | ||||
TrEMBL | A0A1U7YFN5 | 2e-69 | A0A1U7YFN5_NICSY; B3 domain-containing protein REM10-like | ||||
STRING | XP_009801953.1 | 3e-70 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA322 | 15 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00260.1 | 3e-20 | B3 family protein |