PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00332g10015.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 314aa MW: 36055.5 Da PI: 8.7605 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 37.4 | 3.2e-12 | 4 | 45 | 3 | 44 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i+ ++ r+vtf kR++ + KK +E +LC+++ ++i++++++ Peaxi162Scf00332g10015.1 4 ISKERARNVTFKKRKESLKKKLHEFTTLCNVNGCMIMYGPKQ 45 899999*********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.2E-4 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.83E-12 | 1 | 63 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 11.83 | 1 | 44 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.5E-13 | 4 | 45 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MELISKERAR NVTFKKRKES LKKKLHEFTT LCNVNGCMIM YGPKQSNGSS SEPEIWTNNS 60 NTTKSLQEEE VQNLIDGYKK SIMASRSTKT FGLFDYFIDR NKNVEKELIK LRKMNMEKKY 120 PGWLKFLDHL SEIKLREVIS ILDDKIEKVK FRIDLLKVNM NIASEYFVEA AAEGMKLSQL 180 TNYNDNISPL MVQGGSALGG FVSNHHEQAI YPYCNSIVNH QEQVIYPYWQ NNGAASSSGS 240 NNIRGALMKY ETMMCNNQMS YSPYVAPTIR QSAPYMMIPS DFPPMDLPMR ENERDVKGLP 300 SLLLVDRIAH LEMV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019255836.1 | 1e-128 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A1J6IR27 | 1e-127 | A0A1J6IR27_NICAT; Agamous-like mads-box protein agl80 | ||||
STRING | XP_009774508.1 | 1e-126 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2457 | 22 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G55690.1 | 1e-12 | M-type_MADS family protein |