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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00327g00079.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | C2H2 | ||||||||
Protein Properties | Length: 495aa MW: 54483.4 Da PI: 8.7577 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.2 | 1.4e-05 | 88 | 110 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Peaxi162Scf00327g00079.1 88 FVCEICNKGFQRDQNLQLHRRGH 110 89*******************88 PP | |||||||
2 | zf-C2H2 | 12.5 | 0.00044 | 164 | 186 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H + + Peaxi162Scf00327g00079.1 164 WKCEKCSKRYAVQSDWKAHSKIC 186 58*****************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.24E-6 | 87 | 110 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.6E-5 | 87 | 110 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.949 | 88 | 110 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 7.9E-5 | 88 | 110 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.017 | 88 | 110 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 90 | 110 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.2E-4 | 152 | 185 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.24E-6 | 159 | 184 | No hit | No description |
SMART | SM00355 | 130 | 164 | 184 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 495 aa Download sequence Send to blast |
MIKGMLGDDS MSNLTSASNE ASISSSNNRT EIGSALYPQE SLASPANVQT QPPAAIANKK 60 KRNLPGNPDP EAEVIALSPR SLLATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLKQRT 120 NKEVRKKVYV CPEPSCVHHH PSRALGDLTG IKKHFCRKHG EKKWKCEKCS KRYAVQSDWK 180 AHSKICGTRE YRCDCGTLFS RRDSFITHRA FCDALAEESA RTIIPPLQNP LISSSSSHHL 240 NLHTLQNFQL KQEQQQISTN NFNLIPQHPS NELSSQLFMH PHDQNPINNP TSNNHNRSNI 300 FGAASAHMSA TALLQKAAQM GVTSSSNHMT SATSFFSPTS SNITGSTTGL AVAREDHQLE 360 NSAADNNNSG FVTSHHGLAS YNGDNSISKG TNFHFSVTSG FMDQVHDMHN NIGHAGFDEG 420 FGGGTPLMRS KELGGGNITE GMTRDFLGLK AFPDHRDFLN SATTAGLHHQ MGGSSSASSY 480 DHHQQQNQNQ SPWQN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 3e-35 | 160 | 221 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 3e-35 | 160 | 221 | 3 | 64 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 114 | 126 | KLKQRTNKEVRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU457765 | 1e-131 | CU457765.7 S.lycopersicum DNA sequence from clone LE_HBa-76I13, complete sequence. | |||
GenBank | HG975447 | 1e-131 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. | |||
GenBank | HG975520 | 1e-131 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009793158.1 | 0.0 | PREDICTED: zinc finger protein NUTCRACKER-like | ||||
Refseq | XP_016453602.1 | 0.0 | PREDICTED: protein indeterminate-domain 7-like | ||||
Refseq | XP_016537813.1 | 0.0 | PREDICTED: protein indeterminate-domain 7-like | ||||
Swissprot | Q8H1F5 | 1e-122 | IDD7_ARATH; Protein indeterminate-domain 7 | ||||
TrEMBL | A0A2G2W648 | 0.0 | A0A2G2W648_CAPBA; Protein indeterminate-domain 1 | ||||
TrEMBL | A0A2G3BRS5 | 0.0 | A0A2G3BRS5_CAPCH; Protein indeterminate-domain 1 | ||||
STRING | XP_009793158.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA103 | 24 | 350 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03840.1 | 1e-115 | C2H2 family protein |
Publications ? help Back to Top | |||
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