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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00326g00321.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | B3 | ||||||||
Protein Properties | Length: 570aa MW: 65732.7 Da PI: 10.1822 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 41.4 | 2.6e-13 | 53 | 130 | 10 | 99 |
HHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 10 vlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 +k+g l +p f+ ++ +g ++e + + ++W vkl ++++ l++GW++F+++++L gD++vF+++g++ef Peaxi162Scf00326g00321.1 53 GFKNG-LKIPTGFL-KYlKGHEHE---RAILRRGCKKWLVKL--NGQR----LEEGWEKFAEQHDLHLGDILVFRHEGDMEF--D 124 55555.********.564555444...34455677*******..8887....************************999999..9 PP EEEE-S CS B3 94 vkvfrk 99 v++f++ Peaxi162Scf00326g00321.1 125 VSIFDS 130 999986 PP | |||||||
2 | B3 | 60.5 | 2.9e-19 | 198 | 278 | 6 | 90 |
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 ++++ +++g l+lpk+fa ++g+ + ++ l+l+de rsW+++l+y+k+ ++++GW++Fv +n LkegD ++F+ + s++ Peaxi162Scf00326g00321.1 198 VREYCFSRGHLYLPKQFAIANGLTN-KKCNLILKDEGQRSWNLNLSYWKTV--AYIGDGWSKFVVDNCLKEGDCIMFEIVT-SGE 278 678999***************8875.4459***************999997..88***********************765.444 PP | |||||||
3 | B3 | 40.2 | 5.9e-13 | 321 | 405 | 4 | 89 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS. CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr. 87 +++++ k + l+lp +fa+ +g+ +++ +++l+de r W+ + r +++++ + +GW++F angL++gD F+l+++ Peaxi162Scf00326g00321.1 321 STIKPYCIKDSVLYLPLDFAKPNGLMNRK-CEMILKDEAQRPWSGWI-GRVSGRHFGIIRGWSKFRAANGLQVGDAYKFELIKNg 403 46789999999************877655.59***********9888.46666668899**********************9874 PP SE CS B3 88 se 89 + Peaxi162Scf00326g00321.1 404 KI 405 54 PP | |||||||
4 | B3 | 50 | 5.4e-16 | 453 | 541 | 5 | 98 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 ++++++ +++ l++p++fa e +++++ +++++d + rsW+ kl +++r+++++GW +F+ n LkegD ++F++++ ++ Peaxi162Scf00326g00321.1 453 TIQPSSISRHYLRVPRQFALESCLNNRK-CEIIVRD-ERRSWTCKL--YTSGRRTYIGSGWHKFCIVNCLKEGDRLMFEMVS-NG 532 57889999999*******9998555444.4999999.779******..999999*************************988.66 PP E..EEEEE- CS B3 90 felvvkvfr 98 +++v++++ Peaxi162Scf00326g00321.1 533 EKPVLRLYG 541 667887765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.6E-21 | 39 | 133 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.8E-18 | 40 | 133 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.505 | 43 | 131 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.01E-14 | 44 | 129 | No hit | No description |
SMART | SM01019 | 1.1E-13 | 46 | 131 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.1E-10 | 54 | 130 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.59 | 193 | 287 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.3E-19 | 193 | 287 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.0E-20 | 193 | 284 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.51E-19 | 195 | 284 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 7.2E-17 | 197 | 280 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 7.56E-18 | 204 | 272 | No hit | No description |
SuperFamily | SSF101936 | 1.55E-16 | 313 | 405 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.2E-15 | 313 | 405 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.13E-13 | 317 | 403 | No hit | No description |
PROSITE profile | PS50863 | 11.505 | 318 | 413 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.0E-15 | 318 | 416 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-11 | 320 | 406 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-19 | 446 | 538 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.22E-20 | 447 | 539 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.79E-14 | 448 | 540 | No hit | No description |
PROSITE profile | PS50863 | 12.407 | 449 | 543 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.2E-15 | 450 | 543 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.2E-14 | 453 | 540 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 570 aa Download sequence Send to blast |
MKVPPKKPHF FKPIVPGLKN GLKIPTXMGR FIFLAAMKVP PKKPHFFKPI VPGFKNGLKI 60 PTGFLKYLKG HEHERAILRR GCKKWLVKLN GQRLEEGWEK FAEQHDLHLG DILVFRHEGD 120 MEFDVSIFDS SQCNRKYAEY LQEKAQEAHT VEETFKNFEF KEKRRPKDIK SSKKDSFHAK 180 AATNHRKPLG QSRCVCTVRE YCFSRGHLYL PKQFAIANGL TNKKCNLILK DEGQRSWNLN 240 LSYWKTVAYI GDGWSKFVVD NCLKEGDCIM FEIVTSGETP IWKFQVVANG ETPMSKFQGS 300 GDFIRKKPAA SGEDDLPYFI STIKPYCIKD SVLYLPLDFA KPNGLMNRKC EMILKDEAQR 360 PWSGWIGRVS GRHFGIIRGW SKFRAANGLQ VGDAYKFELI KNGKIPEAYF HHLRGSLDSQ 420 EKPESNIKKS GKVFPNVEAS KDMHLSHPHF ICTIQPSSIS RHYLRVPRQF ALESCLNNRK 480 CEIIVRDERR SWTCKLYTSG RRTYIGSGWH KFCIVNCLKE GDRLMFEMVS NGEKPVLRLY 540 GKQFGKDDKN HRSNRQDNKT VGVHGQGKEQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018625364.1 | 1e-174 | PREDICTED: B3 domain-containing protein REM14-like | ||||
TrEMBL | A0A1U7YQU1 | 1e-171 | A0A1U7YQU1_NICSY; B3 domain-containing protein REM10-like | ||||
STRING | XP_009597618.1 | 1e-173 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA322 | 15 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26680.1 | 7e-53 | B3 family protein |