PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00324g00531.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C2H2
Protein Properties Length: 618aa    MW: 70027.6 Da    PI: 8.3551
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00324g00531.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.18.2e-076384223
                              EETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                              +C+ Cg sF+ + +Lk+H+++H
  Peaxi162Scf00324g00531.1 63 TCEECGVSFKKPAHLKQHMQSH 84
                              6*******************99 PP
2zf-C2H2171.7e-0590114123
                               EEET..TTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                               ++C+  dC  s++rk++L+rH+  H
  Peaxi162Scf00324g00531.1  90 FVCHvdDCQSSYRRKDHLTRHLLQH 114
                               89*******************9887 PP
3zf-C2H212.40.00048119144123
                               EEET..TTTEEESSHHHHHHHHHH.T CS
                   zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                               ++Cp   C+ +Fs + n+ +H ++ H
  Peaxi162Scf00324g00531.1 119 FRCPvdGCKSTFSFQGNMSQHVKKiH 144
                               89*********************999 PP
4zf-C2H220.71.1e-06158182123
                               EEET..TTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                               y+Cp   Cgk+F+  s L++H  +H
  Peaxi162Scf00324g00531.1 158 YVCPeaGCGKVFKYASKLRKHEDSH 182
                               9********************9888 PP
5zf-C2H219.62.4e-06278302223
                               EET..TTTEEESSHHHHHHHHHH.T CS
                   zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                               kC+  dC  +Fs++snL++Hi+  H
  Peaxi162Scf00324g00531.1 278 KCEfqDCQHTFSTRSNLVQHIKAaH 302
                               79999****************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355301537IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.4E-1060114No hitNo description
SMARTSM003550.00336284IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.5476289IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.6E-86390IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002806484IPR007087Zinc finger, C2H2
SMARTSM003550.03590114IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.41190119IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.0E-991116IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028092114IPR007087Zinc finger, C2H2
SuperFamilySSF576677.62E-5100144No hitNo description
Gene3DG3DSA:3.30.160.602.2E-5117145IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.006119144IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.954119144IPR007087Zinc finger, C2H2
PROSITE patternPS000280121144IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.0E-9155184IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003554.3E-4158182IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.97158187IPR007087Zinc finger, C2H2
PROSITE patternPS000280160182IPR007087Zinc finger, C2H2
SMARTSM003559.3219244IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280221244IPR007087Zinc finger, C2H2
SMARTSM0035516247268IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.39E-9258315No hitNo description
Gene3DG3DSA:3.30.160.602.1E-5258299IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0037277302IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.214277307IPR007087Zinc finger, C2H2
PROSITE patternPS000280279302IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.1E-5302330IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035511308334IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280310334IPR007087Zinc finger, C2H2
PROSITE profilePS513759.131401435IPR002885Pentatricopeptide repeat
PfamPF015352.6E-5408433IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.5E-6408437IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.437436470IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.32471501IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007567.5E-4477503IPR002885Pentatricopeptide repeat
PfamPF130419.5E-10501540IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.915502536IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.3E-6507537IPR002885Pentatricopeptide repeat
PfamPF138124.7E-4560596IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.199570604IPR002885Pentatricopeptide repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    Send to blast
MGEEEEVKKR DIRRYYCEYC GLCRSKKSLI SSHIMSHHQD EIERRKDEGN EDANVKEGPK  60
MNTCEECGVS FKKPAHLKQH MQSHSIERPF VCHVDDCQSS YRRKDHLTRH LLQHQGKLFR  120
CPVDGCKSTF SFQGNMSQHV KKIHDPSVSP KVDPPKQYVC PEAGCGKVFK YASKLRKHED  180
SHGKSNLKIL IFLLLCVLKT SNNIKLPCIY AVKLETVEAL CLEPGCMKHF TNEKCLKEHI  240
NTCHQHIVCE LCGTKQLKKN IKRHLRTHEE GPTLERVKCE FQDCQHTFST RSNLVQHIKA  300
AHLGDKPFSC GIPGCGMKFA FKHVRDRHEK SGCHVYTPGD FVEADEQFRS RPRGGRKRKL  360
PVFEDIMRKR ITPPSGTDRV FNQGSEYLSW LLSVESDDEL VPPASFLMIS GYVQIGCARE  420
AVELFVEMRN EGFEPDERTL VSVLGACGDL GDVNLGKWVE EYVSGKNMEL NSFMGSALIN  480
MYGKCGDLVS ARRIFDGMRK KDVITGNAMI SGYAQNGLSD ETVSMFNAMK ESGVDPNKIT  540
SVLSACASIG ARDVGKRIDD YASRRGIKHD VYVATALIDM YAKCGNLDDA YQIFVAIWMM  600
HIKFLKTCPE KMKSLGMQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D4e-4340859417330PLS9-PPR
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1350358RPRGGRKRK
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016453639.10.0PREDICTED: transcription factor IIIA-like isoform X2
SwissprotQ84MZ41e-119TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A1S3YMZ90.0A0A1S3YMZ9_TOBAC; transcription factor IIIA-like isoform X2
STRINGXP_009592258.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36442447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-110transcription factor IIIA