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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00317g00020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | TCP | ||||||||
Protein Properties | Length: 805aa MW: 88949.6 Da PI: 6.394 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 122.7 | 4.3e-38 | 68 | 213 | 2 | 135 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasns 85 +g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWLl++a p+i el+ +++ + + ++e++ss++ ++ Peaxi162Scf00317g00020.1 68 TGGKDRHSKVLTSKGLRDRRVRLSVNTAIQFYDLQDRLGVDQPSKAVEWLLKAAAPSISELPPLEAFPDTMQlSDEKRSSAGTEP 152 689*************************************************************555552222333333333322 PP TCP 86 ssg..........kaaksaakskksqksaasalnlak.esrakarararertrekmriknk 135 + + + + ++++s++s++s+ s l+l++ esr kar+ra++r ek + k++ Peaxi162Scf00317g00020.1 153 GFDsadleidnddDPNCQQQHSSNSETSKGSGLSLSRsESRIKARERAKKRAVEKEKEKEN 213 22255677777753333444666667777778999999*************9999988865 PP | |||||||
2 | TCP | 128.1 | 9.1e-40 | 482 | 634 | 2 | 135 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................ssss 69 g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWLl++a p+i el+ + + Peaxi162Scf00317g00020.1 482 SGGKDRHSKVWTSKGLRDRRVRLSVNTAIQFYDLQDRLGYDQPSKAVEWLLKAAAPSISELPPLeafpdtmqlsdekrssaG--- 563 689*************************************************************655555554444332221... PP TCP 70 aseceaesssssasnsssg.................kaaksaakskksqksaasalnlak.esrakarararertrekmriknk 135 +++ + ++++++++s++s++s+ s l+l++ esr kar+ra+er ek + k++ Peaxi162Scf00317g00020.1 564 -------------TEPGFDsadvemdndddpnynyqQQQQQQPCSSNSETSKGSGLSLSRsESRIKARERAKERAVEKEKEKEN 634 .............21111133344444444556675666666699*****************************9999988865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.5E-38 | 69 | 210 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.918 | 70 | 128 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 8.956 | 190 | 209 | IPR017888 | CYC/TB1, R domain |
Pfam | PF03634 | 1.2E-40 | 483 | 631 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.181 | 484 | 542 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 9.68 | 611 | 630 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:1903508 | Biological Process | positive regulation of nucleic acid-templated transcription | ||||
GO:2000306 | Biological Process | positive regulation of photomorphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 805 aa Download sequence Send to blast |
MEMEEIQTQD RKFARISKKN GRMRGQMGDV QYQDEEEDVG EIKKSSLCDV ARLCGWPTSR 60 IVRVSRTTGG KDRHSKVLTS KGLRDRRVRL SVNTAIQFYD LQDRLGVDQP SKAVEWLLKA 120 AAPSISELPP LEAFPDTMQL SDEKRSSAGT EPGFDSADLE IDNDDDPNCQ QQHSSNSETS 180 KGSGLSLSRS ESRIKARERA KKRAVEKEKE KENEPSIVAH HQNMQPSSSF TELLTVGMTN 240 NNNNNSNTRP NGSFHQTTPR QWSNNPLEYF TSGLLGPSTT RGIDNSTNYS GQTHMGNHPQ 300 PMFSITGDHH PELQHFPFIG GDNLVVPVVT TSGGNNSNEY SLNFSISSAS AASSNAGYNR 360 GTLQSNSSAS PSIIPHFQRF TPIDGSQSLF LGTTNAAAAS VYDALIQIKK EKERTDLQFL 420 SSSMMEEIQK FPRISNKIGN KVDEEYQDDE EDVGEVKKNS LCDVARLCGW PSSRIVRVSR 480 ASGGKDRHSK VWTSKGLRDR RVRLSVNTAI QFYDLQDRLG YDQPSKAVEW LLKAAAPSIS 540 ELPPLEAFPD TMQLSDEKRS SAGTEPGFDS ADVEMDNDDD PNYNYQQQQQ QQPCSSNSET 600 SKGSGLSLSR SESRIKARER AKERAVEKEK EKENESTIVA HHQNIHPSSS FTELLTGGMN 660 NNNNNNTSPV HQNTQRQWSN NPLEYFTSGL LGPSTTRGIN NSTGYSGQVQ LGNHLQPMFS 720 ITGDHQPQLQ HFPFNTQTSN TNEYNLNFSI SSASSASSNA GYNRGTLQSN SSTSPSIMPP 780 LFQRFNPIDG SQSLFLGTTN AAAAS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-22 | 75 | 543 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 2e-22 | 75 | 543 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00006 | PBM | Transfer from 493022 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ175239 | 0.0 | KJ175239.1 Petunia x hybrida cultivar W115 transcription factor TCP6 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009591865.1 | 1e-173 | PREDICTED: transcription factor TCP2-like | ||||
TrEMBL | A0A0X7YPS0 | 0.0 | A0A0X7YPS0_PETHY; Transcription factor TCP6 | ||||
STRING | XP_009591865.1 | 1e-173 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2464 | 22 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18390.2 | 2e-41 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |