PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00316g00518.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family HSF
Protein Properties Length: 378aa    MW: 44139.5 Da    PI: 4.8245
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00316g00518.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1171.1e-36411332103
                               HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
              HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 
                               F++k+ye+++d+++++++sws+ +nsf+v+d+e+fa ++Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F
  Peaxi162Scf00316g00518.1  41 FITKTYELVDDPNTNNIVSWSRGNNSFIVWDPETFAMNLLPRYFKHNNFSSFVRQLNTYGFRKVNPDQ---------WEFANEGF 116
                               9****************************************************************999.........******** PP

                               XXXXXXXXXXXXXXXXX CS
              HSF_DNA-bind  87 kkgkkellekikrkkse 103
                                +g+++ll++i+r+k++
  Peaxi162Scf00316g00518.1 117 LRGQRHLLKTIRRRKTS 133
                               **************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.3E-3834125IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.5E-6037130IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467859.25E-3637130IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000569.4E-204164IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.6E-3241130IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.4E-207991IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434080104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.4E-2092104IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MDPFASIKEE FPAGSNYETS SFMWINPQPM EGLHETGPPP FITKTYELVD DPNTNNIVSW  60
SRGNNSFIVW DPETFAMNLL PRYFKHNNFS SFVRQLNTYG FRKVNPDQWE FANEGFLRGQ  120
RHLLKTIRRR KTSNFHPGQA SNQGIDSYNI ELGKLELDGE IDRLRHEKQV LMMELVKLRQ  180
DHQTTKSYIK AMEEKLKRTE VKQQQMMNFL AKAMQNPRFL EQMMQQKERR KLELEEEIRK  240
KRRRPIIHQA GPSNSNVGVR ELGHGVNDGN INNIKLEPQE YYGDQICGFD DFELERLAMS  300
MQRPSGSTIN LEEDYNIENK DMGKLESENK AIDEGFWEDL LDENVEDDMT LLGFEGEDEE  360
EDVDVLAQQL GFLGSRPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-263913318123Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1228243RRKLELEEEIRKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754481e-135HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009797496.10.0PREDICTED: heat stress transcription factor A-6b-like
RefseqXP_009797497.10.0PREDICTED: heat stress transcription factor A-6b-like
SwissprotQ9LUH81e-126HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A1U7Y6B50.0A0A1U7Y6B5_NICSY; heat stress transcription factor A-6b-like
STRINGXP_009797496.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57224113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-110heat shock transcription factor A6B