PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00304g00620.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family WRKY
Protein Properties Length: 243aa    MW: 27889.1 Da    PI: 6.4163
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00304g00620.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY72.17.6e-2385141259
                               --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                               +Dgy+WrKYGqKe+ gs+fpr    Ct++   +Cp+kk+v+r ++dp ++e+tY+++H+++
  Peaxi162Scf00304g00620.1  85 EDGYTWRKYGQKEILGSRFPR----CTHQklyNCPAKKQVQRLDDDPYIFEVTYRSQHTCH 141
                               7*******************6....9999999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081115.51479143IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.9E-2281142IPR003657WRKY domain
SuperFamilySSF1182901.57E-2082142IPR003657WRKY domain
SMARTSM007741.1E-3184142IPR003657WRKY domain
PfamPF031061.6E-2085141IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MSCNYYSNHQ QVFHAEFLGE TRATSFAMHW LPENEIERLQ LPIDVANSSS ASSSSKRQRR  60
RNDDLDRRTV RAAAPMMGNL ENPPEDGYTW RKYGQKEILG SRFPRCTHQK LYNCPAKKQV  120
QRLDDDPYIF EVTYRSQHTC HMSTTAPSVP SHQMDNIIHQ NGSTTTNHPS PLLPMLPQIS  180
AGFSGYNWLS MDVNTPGEGT SSAPLDQQLM VQDMLDIWEQ QQIIAWSSSS SIDNKWDFEF  240
KKE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-1485140968OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016466550.12e-62PREDICTED: WRKY transcription factor 55-like
SwissprotQ9SHB52e-41WRK55_ARATH; WRKY transcription factor 55
TrEMBLM1AGZ72e-61M1AGZ7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000226383e-62(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA92801824
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.13e-35WRKY DNA-binding protein 55
Publications ? help Back to Top
  1. Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P
    An extracellular subtilase switch for immune priming in Arabidopsis.
    PLoS Pathog., 2013. 9(6): p. e1003445
    [PMID:23818851]
  2. Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P
    Correction: An Extracellular Subtilase Switch for Immune Priming in Arabidopsis.
    PLoS Pathog., 2016. 12(11): p. e1006003
    [PMID:27806116]