PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00296g00111.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family AP2
Protein Properties Length: 665aa    MW: 73265.1 Da    PI: 6.4064
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00296g00111.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.26.1e-11250306155
                       AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                               s y+GV++++++gr++A+++d  +     ++ k  + g ++ +++Aa+a++ a++k++g
  Peaxi162Scf00296g00111.1 250 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEDKAARAYDLAALKYWG 306
                               57*******************4444.2455535555.7799999*************98 PP
2AP246.87.5e-15349400155
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Peaxi162Scf00296g00111.1 349 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 400
                               57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.16E-14250316IPR016177DNA-binding domain
CDDcd000187.77E-19250316No hitNo description
PfamPF008471.4E-8250306IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-11251315IPR001471AP2/ERF domain
SMARTSM003805.3E-22251320IPR001471AP2/ERF domain
PROSITE profilePS5103217.082251314IPR001471AP2/ERF domain
PRINTSPR003676.7E-6252263IPR001471AP2/ERF domain
CDDcd000183.85E-25349410No hitNo description
SuperFamilySSF541711.63E-17349409IPR016177DNA-binding domain
PfamPF008479.3E-10349400IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.9E-18350408IPR001471AP2/ERF domain
PROSITE profilePS5103219.177350408IPR001471AP2/ERF domain
SMARTSM003802.7E-33350414IPR001471AP2/ERF domain
PRINTSPR003676.7E-6390410IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
MASSMNNWLG FSLSPHEELA SQTSQDQMSS SVVSAGECFD LTSHDDSCTL PSLNVVPHTP  60
FGIFEAFNRN HQSQDWNNDP NYKTTSEMSM LMASSCNTSQ HLENQETPKL ENFLGIGEQK  120
LQQVCSNNNN NDDYNIYGST TNNISGSNTN NTIGLSMIKN WLRNNPTTTL SQDDKKEDGG  180
VGVVGGNANA QSLSLSMSTG GGGGVGGGGE NSCSSENNKQ QESVSNVDGQ SGAIEAVPRK  240
SIDTFGQRTS IYRGVTRHRW TGRYEAHLWD NSCRREGQTR KGRQGGYDKE DKAARAYDLA  300
ALKYWGPTTT TNFPISNYEK ELEDMKHMTR QEYVASLRRK SSGFSRGASI YRGVTRHHQH  360
GRWQARIGRV AGNKDLYLGT FSTQEEAAEA YDIAAIKFRG LNAVTNFEIN RYDVKSILES  420
STLPIGGAAK RLKDAEQAEI LALDYQRTSQ EISIGSAHLT NGTTIGSYGV NHCWPNIGFQ  480
QAQPLSMHYP YSQQRLWCKQ EVQDSDHMTP QNFQDFQLGN GHNFLQPTSA LHNLMGLDNS  540
SSMEHNNVTY HQGVGSYGTS TQHAGFVLPQ MSSVIAHQES NCQANCYGEN HEVKQQLGSD  600
NMFGNLYYHS QQSSSNGSVK AGLYDHQESA CNNWMSTAVP TLASRNSTMA ICHGAASTFT  660
VWNDT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009610983.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL1
RefseqXP_016452614.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A1S3YK470.0A0A1S3YK47_TOBAC; AP2-like ethylene-responsive transcription factor AIL1
STRINGXP_009610983.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA70992131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-140AP2 family protein