PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00276g00412.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | MYB | ||||||||
Protein Properties | Length: 982aa MW: 108500 Da PI: 5.1972 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.8 | 1.2e-18 | 49 | 95 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+l+++v+ +G + W+t+a+++ gR +kqc++rw+++l Peaxi162Scf00276g00412.1 49 KGSWTKEEDEILIELVNTYGAKKWSTVAQHLA-GRIGKQCRERWHNHL 95 799*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 46.3 | 1e-14 | 101 | 143 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE++ l++a++ +G++ W+ ++ + gRt++ +k++w+ Peaxi162Scf00276g00412.1 101 KEAWTQEEELALIRAHQIYGNK-WAELSKVLL-GRTDNAIKNHWN 143 579*******************.********9.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.844 | 7 | 43 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-7 | 24 | 49 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 31.191 | 44 | 99 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.62E-30 | 46 | 142 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.6E-18 | 48 | 97 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-26 | 50 | 98 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.04E-16 | 51 | 95 | No hit | No description |
Pfam | PF13921 | 1.9E-18 | 52 | 109 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.9E-20 | 99 | 150 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.5E-15 | 100 | 148 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.603 | 100 | 150 | IPR017930 | Myb domain |
CDD | cd00167 | 1.43E-11 | 103 | 143 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 982 aa Download sequence Send to blast |
MERRTSGPKR RSRQWNAEEI LLAAECFNDR TDVQCLHRWQ KVLDPELVKG SWTKEEDEIL 60 IELVNTYGAK KWSTVAQHLA GRIGKQCRER WHNHLNPAIN KEAWTQEEEL ALIRAHQIYG 120 NKWAELSKVL LGRTDNAIKN HWNSSVKKKL DSYWASGLLA QFPSLSNINH QSQSIPSSSM 180 KLLHNSDDES VHQDGIVKEE VSECSQGSPL AGCSHCTSDW GNTFVHIREN DRMSEESLNK 240 NNASSSAAPC SRNYTPDFHD VSCSLPEVPT ELEDSKFLEH NYSHDLGNSI GKDWQFNRED 300 IPNISLEVIQ ESSGLFTHLL NCNENHNMVP FPLQTLTGFG TANAGNVVEG PYRPNEMFSS 360 VDGCRIIHPE EGISQCSPYE TGVNGNGAPE DSLIYQSSND LILETRDMAP QNCNASSLHD 420 FEASRHQAFS VHSQFSSENR SIVFGIASNH PLISPLENPI QESFTSGCDG FIYPSESAAP 480 ADNGTDNSFL ADRLDHTNDS CRLVSVNDLG STTSNTVQKG MLNENTFVPE EQKDGGALCY 540 EPPRFPSLDV PFLSCDLIQS GSDTQQEYSP LGIRQLMMAS ANCLTPLRLW DSPSRDDSPD 600 AILKSAAKTF TWTPSILKKR HRHLVTPLSE KRCEKRLEKD FNQESFSIMT AEFSRPQDMF 660 DQSANEKAST EDKENGHPSS EAGRKEEGDG VTGLSCCGNS ERRLDGGAHY RKEPHGKSAG 720 ANDGIGNVKQ PPGVLVELSS NDLFFSPDRV LVKCDRATSL SNKALANHYA RRLEAASKQV 780 TVSSSFETSC SSVGCSPAVH GKCRSSFVIA TSTALENTAE NSENGFRAET ESIFGETPFK 840 RSIESPSAWN SPWFMNSFLR SPRCEVELAF EDIALFMSPG DRSYDAIGLM KQLSEQTAAS 900 IADAHQILGN DTPETILLQT NSKKQKADEN CSLLTSNAVS ERRTLDFSEC GGTPPAKGKG 960 TTKFDSGTSF SSPSSYLLKC CR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 7e-56 | 9 | 150 | 18 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 7e-56 | 9 | 150 | 18 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016546938.1 | 0.0 | PREDICTED: myb-related protein 3R-1-like | ||||
TrEMBL | A0A1U8EI96 | 0.0 | A0A1U8EI96_CAPAN; myb-related protein 3R-1-like | ||||
TrEMBL | A0A2G2YI29 | 0.0 | A0A2G2YI29_CAPAN; Uncharacterized protein | ||||
STRING | Solyc11g071300.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3107 | 24 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32730.2 | 1e-174 | Homeodomain-like protein |